Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_M02
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    28   1.2  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    25   6.5  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    25   6.5  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   8.7  

>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 277  CPKVRLPPLIIVDSYLIYSYNTSYFVSILRLYKR 378
            C    L  L+IV  + +Y YN +Y+V   R  KR
Sbjct: 1040 CYSAPLSLLLIVPLFFLYLYNRAYYVRTSRELKR 1073


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 596 QPSLHWKTRVSSPVYSTPTIFNDKLILAASTDGKLW 489
           +P L + T   SP Y+ P + N K  + A T   +W
Sbjct: 663 KPDL-FSTSCGSPCYAAPELVNCKSGMYAGTQADIW 697


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/39 (28%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
 Frame = -1

Query: 406 IMYLLAAGMISYTVSKLIQNKMY---YSYILDMSRLLSK 299
           ++Y+L   +I+Y +SK ++N ++    ++ LD+S +  K
Sbjct: 171 VIYVLTIALINYLISKSLKNSIFNPLLTWTLDISVVFFK 209


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 64  QSVHLDKFFLLISSIQIYLNIIVSFKEYGSKPDLNK 171
           Q+  L  F LLI SI ++LNI+ S +    + D+N+
Sbjct: 279 QNNALQSFKLLILSIALWLNILSSQRADDKEFDVNQ 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,572,909
Number of Sequences: 5004
Number of extensions: 52623
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)