Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_M01
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0075 + 3916373-3916400,3916760-3916858,3916943-3917116,391...   198   3e-51
01_01_0071 + 548255-548399,548478-548651,548787-548892,548992-54...   152   3e-37
02_05_1230 - 35099942-35100018,35100138-35100221,35100367-351004...   131   6e-31
10_08_0258 + 16261454-16261540,16261636-16261712,16262734-162628...   130   8e-31
01_06_1505 + 37827495-37827977,37828424-37828914,37828997-37829819     31   0.64 
03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112     30   1.5  
02_04_0317 + 21996324-21996681,21996833-21996859,21997299-219982...    29   3.4  
01_03_0075 - 12218501-12218611,12219028-12219267,12219698-122198...    29   3.4  
06_03_1490 + 30497980-30498102,30499034-30500156,30500914-305011...    29   4.5  
07_03_1412 - 26392239-26392826                                         28   6.0  
05_01_0090 + 598311-599597,599884-599997,600186-600450,600994-60...    28   6.0  
04_03_0192 + 12474614-12474665,12475100-12475152,12475793-12476032     28   7.9  
02_03_0122 - 15491106-15491509,15492668-15492695                       28   7.9  

>09_02_0075 +
           3916373-3916400,3916760-3916858,3916943-3917116,
           3917207-3917312,3917671-3917809,3918457-3918534,
           3918863-3918928,3919213-3919298,3919939-3920038,
           3920245-3920355,3920457-3920498,3920671-3920757,
           3921013-3921102
          Length = 401

 Score =  198 bits (484), Expect = 3e-51
 Identities = 109/217 (50%), Positives = 140/217 (64%), Gaps = 3/217 (1%)
 Frame = -2

Query: 678 DXYAVNSYKRSAAAYEAKAFVDELVPVPVPQKRGAP-VIFAEDEEYKRVNFEKFTKLSTV 502
           D YA+ S +R  AA  + AF  E+VP+ VP  RG P V+  +DE   + +  K  KL   
Sbjct: 183 DAYAIQSNERGIAARNSGAFAWEIVPIEVPVGRGKPPVLVDKDEGLDKFDPVKLKKLRPS 242

Query: 501 FQKENGTVTAGNASTLNDGXXXXXXXXXXXAKRLNVKPIARIVGFADGECDPIDFPIAPA 322
           F++  GTVTAGNAS+++DG           A+ L ++ IARI GFAD    P  F  +PA
Sbjct: 243 FKENGGTVTAGNASSISDGAAALVLVSGQKAQELGLQVIARIKGFADAAQAPELFTTSPA 302

Query: 321 VAIPKLLEKTGVRKEDVALWEINEAFSVVAVANQKLLGLDPSKINVHGGAVSLGHPIGMS 142
           +AIPK L   G+    V  +EINEAFS VA+ANQKLLG+   KINVHGGAVSLGHP+G S
Sbjct: 303 LAIPKALANAGLESSRVDYYEINEAFSAVALANQKLLGIPSEKINVHGGAVSLGHPLGCS 362

Query: 141 GARIVVHLCHAL--KKGEKGVASICNGGGGASSVMIE 37
           GARI+V L   L  K G+ GVA +CNGGGGAS++++E
Sbjct: 363 GARILVTLLGVLREKGGKIGVAGVCNGGGGASALVLE 399


>01_01_0071 +
           548255-548399,548478-548651,548787-548892,548992-549130,
           549216-549293,549395-549460,550061-550201,550417-550527,
           550614-550655,550739-550825,551033-551118,551681-551684
          Length = 392

 Score =  152 bits (368), Expect = 3e-37
 Identities = 90/216 (41%), Positives = 124/216 (57%), Gaps = 2/216 (0%)
 Frame = -2

Query: 678 DXYAVNSYKRSAAAYEAKAFVDELVPVPVPQKRGAPVIFAEDEEYKRVNFEKFTKLSTVF 499
           D YA+ S +R+ AA ++  F  E+ PV +   RG P +  + +E    +  K T L +  
Sbjct: 189 DLYAIQSNERAIAARDSGTFSWEIAPVEISSGRGKPPLIVDKDE----SLAKCTSLPSRL 244

Query: 498 QKENGTVTAGNASTLNDGXXXXXXXXXXXAKRLNVKPIARIVGFADGECDPIDFPIAPAV 319
             +            +DG           AK L ++ IARI G+AD    P  F   PA+
Sbjct: 245 PSK----------IRSDGAAAIVLVSGQKAKSLGLQVIARIRGYADAAQAPELFTTTPAL 294

Query: 318 AIPKLLEKTGVRKEDVALWEINEAFSVVAVANQKLLGLDPSKINVHGGAVSLGHPIGMSG 139
           AIPK +   G++   +  +EINEAFSVVA+ANQKLLG+   K+N+ GG VSLGHPIG SG
Sbjct: 295 AIPKAVSNAGLQTSQIDYYEINEAFSVVALANQKLLGIPSGKLNLSGGGVSLGHPIGCSG 354

Query: 138 ARIVVHLCHAL--KKGEKGVASICNGGGGASSVMIE 37
           ARI+V L   L  K G+ GVA +CNGGGGAS++++E
Sbjct: 355 ARIIVTLLGILRHKNGKIGVAGVCNGGGGASALVVE 390


>02_05_1230 -
           35099942-35100018,35100138-35100221,35100367-35100475,
           35100564-35100687,35101157-35101253,35101375-35101507,
           35101654-35101731,35101821-35101928,35102011-35102078,
           35102181-35102279,35102379-35102505,35102623-35102707,
           35103297-35103373,35103482-35103562
          Length = 448

 Score =  131 bits (316), Expect = 6e-31
 Identities = 84/225 (37%), Positives = 122/225 (54%), Gaps = 10/225 (4%)
 Frame = -2

Query: 678 DXYAVNSYKRSAAAYEAKAFVDELVPVP---VPQKRGAP---VIFAEDEEYKRVNFEKFT 517
           D  A  S++R+AAA  A  F DE+VPVP   V  K G     VI  +D            
Sbjct: 212 DQAAAESHRRAAAATAAGKFKDEIVPVPTKIVDPKTGEEKKVVISVDDGIRPGTTASGLA 271

Query: 516 KLSTVFQKENGTVTAGNASTLNDGXXXXXXXXXXXAKRLNVKPIARIVGFADGECDPIDF 337
           KL  VF+K+ GT TAGN+S ++DG           A +  +  +     FA    DP   
Sbjct: 272 KLKPVFRKD-GTTTAGNSSQVSDGAGAVLLMRRDVAMKKGLPILGVFRSFAAVGVDPAVM 330

Query: 336 PIAPAVAIPKLLEKTGVRKEDVALWEINEAFSVVAVANQKLLGLDPSKINVHGGAVSLGH 157
            + PAVAIP  ++  G++ ED+ L+E+NEAF+   V     LGLD SK+NV+GGA++LGH
Sbjct: 331 GVGPAVAIPAAVKSAGLQIEDIDLFELNEAFASQFVYCCNKLGLDRSKVNVNGGAIALGH 390

Query: 156 PIGMSGARIVVHLCHALKKGEK----GVASICNGGGGASSVMIEK 34
           P+G +GAR V  L + +K+  +    GV ++C G G  ++ + E+
Sbjct: 391 PLGATGARCVATLLNEMKRRGRDCRFGVVTMCIGSGMGAAAVFER 435


>10_08_0258 +
           16261454-16261540,16261636-16261712,16262734-16262818,
           16262931-16263057,16263147-16263245,16263343-16263410,
           16263514-16263621,16263727-16263804,16263921-16264053,
           16264138-16264234,16264465-16264588,16264668-16264776,
           16264899-16264982,16265071-16265180
          Length = 461

 Score =  130 bits (315), Expect = 8e-31
 Identities = 85/225 (37%), Positives = 125/225 (55%), Gaps = 10/225 (4%)
 Frame = -2

Query: 678 DXYAVNSYKRSAAAYEAKAFVDELVPVP---VPQKRGAP---VIFAEDEEYKRVNFEKFT 517
           D  AV S++++AAA  +  F +E+VPV    V  K G     V+ A+D      +    +
Sbjct: 214 DQAAVESHRKAAAAAASGKFKEEIVPVHTKIVDPKTGEEKEIVVSADDGIRPGTSLAVLS 273

Query: 516 KLSTVFQKENGTVTAGNASTLNDGXXXXXXXXXXXAKRLNVKPIARIVGFADGECDPIDF 337
           KL   F K+ GT TAGNAS ++DG           A +  +  +     FA    DP   
Sbjct: 274 KLKPAFSKD-GTTTAGNASQVSDGAGAVLLMRRDIAMQKGLPIVGVFRSFAAVGVDPAIM 332

Query: 336 PIAPAVAIPKLLEKTGVRKEDVALWEINEAFSVVAVANQKLLGLDPSKINVHGGAVSLGH 157
            + PAVAIP  ++  G++ +DV L+EINEAF+   V   K LGLDP+K+NV+GGA++LGH
Sbjct: 333 GVGPAVAIPAAVKAAGLQIDDVDLFEINEAFASQYVYCCKKLGLDPAKVNVNGGAMALGH 392

Query: 156 PIGMSGARIVVHLCHALKKGEK----GVASICNGGGGASSVMIEK 34
           P+G +GAR V  L + +K+  K    GV S+C G G  ++ + E+
Sbjct: 393 PLGATGARSVSTLLNEMKRRGKDCRFGVISMCIGSGMGAAAVFER 437


>01_06_1505 + 37827495-37827977,37828424-37828914,37828997-37829819
          Length = 598

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
 Frame = +2

Query: 350 SHSPSANPTIRAIGL----TFNLLAASAVINTKA--AAPSFNVEALPAVTVPFSFWNTVD 511
           S +P    T++ IG+    +  L+  SA++ T+    A  F +   P  T+P SFW  V 
Sbjct: 429 SKNPRGITTLQRIGIGLIISVILMVVSALVETRRLMVARDFGLVDNPEATIPMSFWWVVP 488

Query: 512 NFV 520
            F+
Sbjct: 489 QFI 491


>03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112
          Length = 1372

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 22/79 (27%), Positives = 37/79 (46%)
 Frame = +2

Query: 239  TLKASFISHNATSSFLTPVFSNNLGMATAGAIGKSMGSHSPSANPTIRAIGLTFNLLAAS 418
            T   + +  N+T   L  V   NLG ++AG +G S    +  ++  +   G   NL   +
Sbjct: 1172 TQSGAELDANSTVEVLGEVLGTNLGASSAGNLGVS----AIRSDERVGLAGDARNLRLGT 1227

Query: 419  AVINTKAAAPSFNVEALPA 475
            ++ N  + + S  VE LPA
Sbjct: 1228 SMPNLSSDSASAQVEVLPA 1246


>02_04_0317 +
           21996324-21996681,21996833-21996859,21997299-21998227,
           21998317-21999162
          Length = 719

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 80  EATPFSPFFKAWHRCTTMRAPDIPIG*PKLTAP 178
           +  PF+ F   W RC  M  P  P+  PK  AP
Sbjct: 168 DGCPFTMFAPFWDRCLCMPDPAAPLLPPKRIAP 200


>01_03_0075 -
           12218501-12218611,12219028-12219267,12219698-12219815,
           12219949-12220016,12220124-12220375,12221362-12221463,
           12221734-12221802,12221892-12221987,12222161-12222208,
           12222352-12222479,12222818-12222896,12223651-12223797,
           12223956-12224022,12224655-12224830,12225588-12225755,
           12225879-12225992,12226657-12226722,12227306-12227524,
           12228142-12228321,12228481-12228584,12228998-12229277,
           12230582-12231004
          Length = 1084

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = -2

Query: 252 EAFSVVAVANQKLLGLDPSKINVHGGAV 169
           EAF+VV  A++++LGL P  + + GG V
Sbjct: 142 EAFAVVREASKRVLGLRPFDVQLIGGMV 169


>06_03_1490 +
           30497980-30498102,30499034-30500156,30500914-30501132,
           30501228-30501454,30501810-30501884,30502250-30502321,
           30502765-30502863,30502975-30503046,30503131-30503245,
           30503455-30503523,30503625-30503952,30504320-30504437,
           30504522-30505448
          Length = 1188

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
 Frame = +2

Query: 272 TSSFLTPVFSNNLGMATAGAIGKSM------GSHSPSANPTIRAIGLTFNLLAASAVIN- 430
           TS   T   S  + +ATAG   +S       GSH+P++  +++A     NLL++    N 
Sbjct: 202 TSQTPTRGVSPQVNLATAGIPTQSSTPIAGYGSHTPASTTSVKANSADLNLLSSPPAAND 261

Query: 431 TKAAAPSFN 457
           +KA  P  N
Sbjct: 262 SKALVPLGN 270


>07_03_1412 - 26392239-26392826
          Length = 195

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 336 PIAPAVAIPKLLEKTGVRKEDVALWEINEAFS 241
           P+    A+P  LE+T VR + V L+   EAF+
Sbjct: 88  PMTEGRALPPSLEETAVRAQGVYLYNSKEAFN 119


>05_01_0090 +
           598311-599597,599884-599997,600186-600450,600994-601109
          Length = 593

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = -2

Query: 180 GGAVSLGHPIGMSGARIVVHLCHA--LKKGEKGVASICNGGGGASSVM 43
           GG  S+GH +   G        H   L      +AS   GGGG +SV+
Sbjct: 43  GGCNSIGHILSFDGRDAPAFAIHGVLLPSNPSTMASTGGGGGGGASVL 90


>04_03_0192 + 12474614-12474665,12475100-12475152,12475793-12476032
          Length = 114

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 177 GAVSLGHPIGMSGARIVVHLCHALKKGEKGVASICNGGGGASSV 46
           G  +    IG  G+ + V    A + G+KG A +C  GG ++ V
Sbjct: 54  GGKNAATQIGGEGSDVRVLQAAAAQMGKKGAAHVCITGGSSTDV 97


>02_03_0122 - 15491106-15491509,15492668-15492695
          Length = 143

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 138 ARIVVHLCHALKKGEKGVASICNGG 64
           AR+ VHL H  +K  +GVA  C GG
Sbjct: 2   ARLAVHLVHLRRKPARGVA--CGGG 24


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,007,348
Number of Sequences: 37544
Number of extensions: 369434
Number of successful extensions: 1318
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)