Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_L17
         (856 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   3.4  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    26   7.8  

>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 330

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 394 YFHQTLPKFAIKFLSSFYTITFKTLQSLYIGLLVFDTKQ 510
           YF ++   F I  L+S + ++F+TL S +   LV D  Q
Sbjct: 254 YFTESFGSFFISRLASQFLVSFQTLPSFFSFPLVTDNWQ 292


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +2

Query: 305 PSSTNVNPSHT*RATFNRHAENVTRKLYANTFIRRY-PNSLLSFLVHFTQSPL 460
           PS+TNV+ + T  A  N  A    R+  ++T    Y  +S LS+L H T+  L
Sbjct: 218 PSTTNVSNASTSSAPINPRAPQTRRESISSTSSIHYCSSSSLSYL-HDTERAL 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,443,277
Number of Sequences: 5004
Number of extensions: 69824
Number of successful extensions: 142
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)