Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_L17
         (856 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0054 - 6398829-6399047,6399470-6399676,6399858-6400557,640...    29   4.7  
11_01_0569 + 4515722-4515733,4517579-4517701,4517812-4517934,452...    28   8.3  
03_06_0321 + 33112793-33113026,33113166-33113546                       28   8.3  

>02_02_0054 -
           6398829-6399047,6399470-6399676,6399858-6400557,
           6400927-6401120
          Length = 439

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -1

Query: 418 IWVTSDESICVKFSCYIFCVTVKCRASRVTRVHVSRGGRG 299
           +W+T  +S+ ++ +  +   + K    R  +VH++RGG G
Sbjct: 158 LWITFAKSMVIRLTQELLVASDKTIDGRGAQVHIARGGAG 197


>11_01_0569 +
           4515722-4515733,4517579-4517701,4517812-4517934,
           4520422-4520520,4520649-4520705,4521421-4521533,
           4521633-4521810,4523684-4523764,4523837-4523920,
           4525429-4525437
          Length = 292

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 770 RCSSGTFCTFNVCFKFETWSKLCQIVSCGRT 678
           R     + ++ +CF + TW  +  +VS GRT
Sbjct: 171 RSDGSWYGSWGICFTYATWFAVTGLVSAGRT 201


>03_06_0321 + 33112793-33113026,33113166-33113546
          Length = 204

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 127 EITHKHYIVLTCICHILVTKNFN 195
           E  H+ Y + TC CH  V  N N
Sbjct: 101 EFQHRGYSLFTCNCHSFVVNNLN 123


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,800,969
Number of Sequences: 37544
Number of extensions: 393517
Number of successful extensions: 776
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)