Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_L17
         (856 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81557-8|CAD90179.1|  353|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AL132862-33|CAB70222.3|  308|Caenorhabditis elegans Hypothetical...    28   7.4  
AF101310-4|AAC69214.2|  662|Caenorhabditis elegans Hypothetical ...    28   9.7  

>Z81557-8|CAD90179.1|  353|Caenorhabditis elegans Hypothetical
           protein F59A1.14 protein.
          Length = 353

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 386 YANTFIRRYPNSLLSFLVHFTQSPLKLYNLSILDCSFSI 502
           Y N F+  + NS+L FL+  T++P  + N   L   FSI
Sbjct: 12  YLNAFVAVFSNSILIFLI-ITKTPRSMGNYRFLMLIFSI 49


>AL132862-33|CAB70222.3|  308|Caenorhabditis elegans Hypothetical
           protein Y73F8A.3 protein.
          Length = 308

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 21/56 (37%), Positives = 27/56 (48%)
 Frame = +2

Query: 416 NSLLSFLVHFTQSPLKLYNLSILDCSFSIRNKRSTILYLYYQR*IYNYVYGHRLII 583
           N    +L+ FT+ P K  N   L  SFSI N   +IL +     I+ Y Y   LII
Sbjct: 22  NPFFIYLI-FTEDPTKFGNYRYLLLSFSIFNMVYSILNVLVPIDIHTYSYCMFLII 76


>AF101310-4|AAC69214.2|  662|Caenorhabditis elegans Hypothetical
           protein C39F7.5 protein.
          Length = 662

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 572 YVRTHNYRFIFGNIDRVSLNACFVSKTSS 486
           Y+ TH +RFI  +  +++ ++CF   TS+
Sbjct: 377 YISTHAFRFIERDFLKIAASSCFFELTSN 405


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,215,833
Number of Sequences: 27780
Number of extensions: 397057
Number of successful extensions: 839
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)