Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_L15
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    27   2.5  
SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo...    26   3.4  
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    26   4.4  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   5.9  
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S...    25   5.9  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    25   7.7  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    25   7.7  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   7.7  

>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -3

Query: 175 HNVKKVNDAFVSSGDFQQLPVNSSKNEPMIT--LPSPKLDNVWAAIN 41
           H +KK+ND     G   QLP+    NE  +T  +  PK  + + A N
Sbjct: 112 HELKKLNDDHTVHGVLVQLPLPKHLNERTVTESITPPKDVDGFGAFN 158


>SPAC12B10.07 |acp1||F-actin capping protein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = -3

Query: 337 IRETQRENRDLKMPNVNMG--KKPDKYFSFTNVELPVKYNSK-FMNSIW 200
           +++ ++   D  + +V  G  KK D+  SFT V +  KYN K + N  W
Sbjct: 107 VKQIKKVASDHYLSDVTFGIIKKSDEVESFTIVLVSSKYNPKNYWNGSW 155


>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = -3

Query: 469 SNSFELIIPQKKTVTLSKLIFELCKACELKKMSCIPPSAF--TAGRIRETQRENRDLKMP 296
           S   +++IP K +V  + L   L   C    ++C+ P  F  T   +R ++   R   + 
Sbjct: 301 SKKNDVLIPYKDSVLTTLLQDALGGNCRTIMLTCVSPCDFDDTFSALRYSEAARRIKNIS 360

Query: 295 NVN 287
           N+N
Sbjct: 361 NIN 363


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 444 GMMSSKLLESSQTLRYVQRNFLGFSSTMNYTDQRERLFN 560
           G + S +LES  +L    RN   F++  + + + ERL N
Sbjct: 48  GSVHSPILESPTSLNRQHRNSFSFNNVSSPSLEDERLIN 86


>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
           Spo6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 15/56 (26%), Positives = 31/56 (55%)
 Frame = -3

Query: 445 PQKKTVTLSKLIFELCKACELKKMSCIPPSAFTAGRIRETQRENRDLKMPNVNMGK 278
           PQ++T    +  F+  KA    KM+ +PP+AF+   ++ +   N+D+   ++ + K
Sbjct: 64  PQQQTHMPHQNAFDSAKATA--KMA-LPPTAFSNYCVKPSLTRNKDIPRTSIRVSK 116


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 187 RYSPHNVKKVNDAFVSSGDFQQLPVNSSKNEPMITLPS 74
           R S  N KK +D   S+GD     V+S  +  ++ LPS
Sbjct: 417 RSSSENNKKEDDLKDSTGDLNTTQVSSRVDNFLLKLPS 454


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = -3

Query: 193 YNRYSPHNVKKVNDAFVSSGDFQQLPVNSSKN----EPMITLPSPKLDNVW 53
           +N  S  +VKK  +  + S    QL  NS  +       +T+P  K+D VW
Sbjct: 530 HNSPSLLSVKKRQNNHIRSNTLIQLNSNSKDSTIFPRRSVTVPGDKIDTVW 580


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 396  LHSSKINLLSVTVFFCGMMSSKLLESSQTLRYVQRNFLGFSSTMNYTDQ 542
            LH+SK++ LS T      ++  L E+++ L   +R F  F S  +  DQ
Sbjct: 1415 LHNSKVSKLSFTKSNKSTLNPNLKETAEEL---ERKFREFCSNKDELDQ 1460


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,442,749
Number of Sequences: 5004
Number of extensions: 51894
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)