Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_L10
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    30   0.31 
SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|...    27   2.8  
SPAC869.10c |||proline specific permease |Schizosaccharomyces po...    26   3.8  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    26   5.0  
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    26   5.0  
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    25   8.7  
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo...    25   8.7  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    25   8.7  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   8.7  

>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 205 RNTKARQVCIATSPLNISEASISKQSEPAKKK 110
           +N+K+R V + +SP N+   ++S   +  KKK
Sbjct: 561 KNSKSRNVSVFSSPFNVPSFTVSSSDQVQKKK 592


>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
           Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +3

Query: 219 LDSFVITTPIFKWL---DILTTRWQRYNNTTHLIFSRLFNFLDNSESL 353
           L++ +I     +W+   D + TR++   +T H+IF++  N  DN E++
Sbjct: 3   LEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKIN--DNPENM 48


>SPAC869.10c |||proline specific permease |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 552

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 10/67 (14%)
 Frame = +3

Query: 105 NSFFFAGSDCLLILASD-----ILR-----GDVAIHTCLAFVFLCWSYLDSFVITTPIFK 254
           NSF FAGS  +  LA +     I +     G   I   +  +F C ++L++      +F 
Sbjct: 350 NSFLFAGSRSIYSLAKEHQAPKIFKYCNRWGVPVISVAVTVLFACLAFLNASASAAVVFN 409

Query: 255 WLDILTT 275
           W   L+T
Sbjct: 410 WFCNLST 416


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 447 HSNSFDGAHYLVLHIILHVVFQLCEL 524
           HSN+ + A Y+V+H +L V+F +  L
Sbjct: 700 HSNNINDA-YVVIHTLLKVIFSVVPL 724


>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 290 IPLPSCSQDVQPLENRCSNDKAIQVAPAQ 204
           +PLPS  ++ +PLE R  +D    +A  Q
Sbjct: 472 VPLPSEMKEAEPLEGRYPSDHVALMANVQ 500


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +3

Query: 156 ILRGDVAIHTCLAFVFLCWSYLDSFVITTPIFKWLDILT 272
           +L G +     L  +F  W  LDS +  + +   +DI T
Sbjct: 220 VLGGRITDSMVLVIIFHTWYVLDSLINESAVLTTMDITT 258


>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 465 GAHYLVLHIILHVVFQLCELLNLSFLY 545
           G  ++V H  L V + +CEL N   +Y
Sbjct: 173 GPRHIVFHKTLPVCYLICELANRILVY 199


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 496 RIICNTR**APSNEFE*NQTVYHPNSIVGQIENENSLIVNL 374
           R +CN      +N +   Q + HP SI+G     N+LI N+
Sbjct: 68  RELCNKTITVCTNHY---QVIGHPISIIGSNYERNALIFNM 105


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1213

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 474  YLVLHIILHVVFQLCELLNLSFLYLHSDRY 563
            YL  H  L ++F    +LNLS ++    +Y
Sbjct: 1019 YLFSHSFLVIIFACSVILNLSLMFCFGAKY 1048


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,475,649
Number of Sequences: 5004
Number of extensions: 50238
Number of successful extensions: 146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)