Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_L10
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U52002-5|AAB37729.2|  534|Caenorhabditis elegans Hypothetical pr...    30   1.1  
AL132860-25|CAB60510.1|  413|Caenorhabditis elegans Hypothetical...    29   2.0  
AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical...    28   4.6  
AC006795-4|AAK84612.2|  430|Caenorhabditis elegans Hypothetical ...    27   8.1  

>U52002-5|AAB37729.2|  534|Caenorhabditis elegans Hypothetical
           protein F08B4.5 protein.
          Length = 534

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +3

Query: 96  LRNNSFFFAGSDCLLILASDILRGDVAIHTCLAFVFLCWSYLDSFVITTPIFKWL 260
           L +N  +F G D +    SD LR  +A     + VFL   +LD   +   +FK L
Sbjct: 243 LSSNENWFGGDDKIAFRCSDRLRSALAKQEDTSLVFLSDVFLDDKKVMKAVFKLL 297


>AL132860-25|CAB60510.1|  413|Caenorhabditis elegans Hypothetical
           protein Y56A3A.31 protein.
          Length = 413

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +3

Query: 411 PTIEFGW*TVWFHSNSFDGAHYLVLHIILHVVFQLCELLNLSFLYLHSDRYI 566
           PT+     +V F   SF    Y VL I+ HV+  LC++ N+    ++SDR I
Sbjct: 147 PTLHEYRLSVMFQLVSFS-IQYPVLQILNHVMGWLCQMKNVEQERIYSDRLI 197


>AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical
           protein F59E12.1 protein.
          Length = 811

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -1

Query: 166 PLNISEASISKQSEPAKKKLLFLRTNLTVMSQIHQQQKEQLLTMGERRR 20
           P+  SE+S   Q+ PA       R  + V + I  +Q  Q ++MGERRR
Sbjct: 424 PIARSESSFDFQTAPASPMDTSTR-EIEVQTDITIRQAVQAVSMGERRR 471


>AC006795-4|AAK84612.2|  430|Caenorhabditis elegans Hypothetical
           protein Y50D4B.4 protein.
          Length = 430

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 169 SPLNISEASISKQSEPAKKK-LLFLRTNLTVMSQI 68
           SPL++ E +IS+Q  P+KK   L L   L + S +
Sbjct: 9   SPLSLGETNISQQKHPSKKSTALALVGTLVIFSTV 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,646,857
Number of Sequences: 27780
Number of extensions: 277476
Number of successful extensions: 739
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)