Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_L10
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    26   0.34 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.4  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   7.2  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   7.2  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   7.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.6  

>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 11/45 (24%), Positives = 19/45 (42%)
 Frame = -3

Query: 512 LENYMENYMQYKIMSSIK*IRMKPNCLPSKFDCRADRKRKFTHSE 378
           ++ YM    Q   +     + M+P C+  ++ C   RK K    E
Sbjct: 28  IDMYMRRKCQECRLKKCLTVGMRPECMVPEYQCAVKRKEKKAQKE 72


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/45 (22%), Positives = 19/45 (42%)
 Frame = -3

Query: 512 LENYMENYMQYKIMSSIK*IRMKPNCLPSKFDCRADRKRKFTHSE 378
           ++ YM    Q   +     + M+P C+  ++ C   RK +    E
Sbjct: 231 IDMYMRRKCQECRLKKCLTVGMRPECVVPEYQCAVKRKEEKAQKE 275


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 546 LHSDRYIGGWKKCI 587
           LHSDR +  + KC+
Sbjct: 38  LHSDRLLNNYFKCL 51


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 546 LHSDRYIGGWKKCI 587
           LHSDR +  + KC+
Sbjct: 38  LHSDRLLNNYFKCL 51


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 546 LHSDRYIGGWKKCI 587
           LHSDR +  + KC+
Sbjct: 38  LHSDRLLNNYFKCL 51


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 28  SHPXSTVAPSVAGEFDSSLSNLSSGTT 108
           SH  S V  SVAG   SS  +  +GTT
Sbjct: 233 SHQNSNVPKSVAGLNVSSRRSDMNGTT 259


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 129 DCLLILASDILRGDVAIHTCLA 194
           D  L++ S   +GD  ++TC A
Sbjct: 570 DGTLVITSVQKKGDAGVYTCSA 591


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 129 DCLLILASDILRGDVAIHTCLA 194
           D  L++ S   +GD  ++TC A
Sbjct: 570 DGTLVITSVQKKGDAGVYTCSA 591


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,581
Number of Sequences: 438
Number of extensions: 3473
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)