Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_L07
         (716 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0127 - 22580720-22580808,22580936-22580987,22581703-225819...    37   0.014
02_01_0126 + 924691-924839,925103-925220,925303-925389,925482-92...    30   2.1  
08_02_0521 - 18135036-18135152,18135662-18135943                       29   4.9  
02_03_0241 - 16778301-16779767                                         29   4.9  
01_06_1263 + 35840502-35841308,35841763-35841969,35842272-358423...    29   4.9  
07_03_1570 + 27797315-27797409,27797519-27797551,27798135-277981...    28   8.5  

>05_05_0127 -
           22580720-22580808,22580936-22580987,22581703-22581908,
           22582019-22582152,22582239-22582369,22583333-22583392,
           22583615-22583755,22583880-22584347,22584524-22584686,
           22585373-22585476,22585755-22585853,22586177-22586281,
           22586516-22586596,22587168-22587986,22588497-22588553
          Length = 902

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 19/51 (37%), Positives = 26/51 (50%)
 Frame = -3

Query: 645 SEYPVYYYVFSYIGNNSYYVDPGTGKPAGAAHHDDTIYVLTQSYQFPTIQT 493
           +EY  YYY +    N S     GT + +GAAH   T +  ++SY  PT  T
Sbjct: 116 AEYANYYYSYPQTTNGSSVQQGGTNQHSGAAHQPLTSFQNSESYVGPTSNT 166


>02_01_0126 +
           924691-924839,925103-925220,925303-925389,925482-925631,
           925750-925809,925914-925976
          Length = 208

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 366 RGRTPATGPRSPGCRRSCLDRRV 434
           RGR PA G R+   RR  LDRR+
Sbjct: 6   RGRLPAAGSRAAALRRRILDRRL 28


>08_02_0521 - 18135036-18135152,18135662-18135943
          Length = 132

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 531 RRWCRRGEQLQLVSRC 578
           +RWCR G Q Q+VS C
Sbjct: 35  QRWCRLGRQQQMVSTC 50


>02_03_0241 - 16778301-16779767
          Length = 488

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 544 RHHLRTHSVVPVPHHTDGQPRLPRR*RDDC 455
           +HH R H + P  H    +PR+P +   +C
Sbjct: 307 KHHGRAHFIFPTDHRARMEPRVPDKYLGNC 336


>01_06_1263 +
           35840502-35841308,35841763-35841969,35842272-35842370,
           35843361-35843464,35844521-35844698,35844774-35845244,
           35845383-35845523,35846290-35846349,35846427-35846490,
           35847295-35847524,35847606-35847704
          Length = 819

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -3

Query: 642 EYPVYYYVFSYIGNNSYYVDPGTGKPAGAAHHDDTIYVLTQSYQFPTIQT 493
           +YP YYY      N S  V  G  + +GAA+   T +  + SY  PT  T
Sbjct: 92  QYPNYYYNCPQSTNESS-VQQGVDQSSGAAYQPLTSFQNSGSYVGPTSNT 140


>07_03_1570 +
           27797315-27797409,27797519-27797551,27798135-27798199,
           27798406-27798493,27798579-27798651,27798975-27799081,
           27799595-27799637,27799760-27799816,27799905-27799981,
           27800221-27800266,27800364-27800410,27800498-27800571,
           27800656-27800711,27800885-27801011,27801133-27801206
          Length = 353

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
 Frame = -3

Query: 693 IIGFSVHRMVKLMSRHSEYPVYYYVFS----YIGNNSY 592
           ++G   +R+++ ++ HSEYP+    FS    Y+G+ S+
Sbjct: 245 LVGILPNRIIQPLAEHSEYPIEALAFSNDRNYLGSISH 282


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,831,687
Number of Sequences: 37544
Number of extensions: 408477
Number of successful extensions: 1066
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)