Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_L04
(701 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual 28 1.1
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po... 28 1.1
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 1.1
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 27 2.6
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 27 2.6
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 27 2.6
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 26 6.0
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 26 6.0
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 26 6.0
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa... 26 6.0
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo... 25 7.9
>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 656
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +3
Query: 441 AASPPASEGAADSVTVEPRDLASAACARFFFRISSKSLLL 560
A +P GA D + VE D + AC+ F R SLLL
Sbjct: 17 AINPSTLSGAIDVIVVEQED-KTLACSPFHVRFGKFSLLL 55
>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Frame = +1
Query: 274 IVLVERTRSVLRLQVPR---LLMMVC*IFLWKV--SVRGQEYLRRQRLVCWHVSYHCNSI 438
++ VE+ + VP L M C L+ ++ ++ ++ L+ +HVS C S+
Sbjct: 48 LITVEKIDVFINAMVPSTFALFCMACPYLLYTAVDALLNKDVIQMSALLIFHVSLFCLSV 107
Query: 439 WQRRHQHRKEPRILLL 486
Q K+PR + L
Sbjct: 108 VQYFQIFSKDPRAIFL 123
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/73 (26%), Positives = 34/73 (46%)
Frame = -3
Query: 453 VATLPNRITVVRNVPTHQPLPAKILLPPHRNLPEEDSTDHHQEPWNLKPKNRTSPFNQHD 274
V + P+ +V P+ P+P + + H N+ +E + P + P TS + H+
Sbjct: 370 VPSAPSNESVSSAAPSKIPVPEEASINEHSNITDEAVS----LPEPVYPNAPTSAVSVHN 425
Query: 273 PTGSPDEETIKNA 235
PT S + E + A
Sbjct: 426 PTISDEAEPTERA 438
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 458 CWWRRCQIELQW*ETCQHTSRCRRRYSCPR 369
CWWR C E Q ET Q ++ + Y PR
Sbjct: 420 CWWRICVDEAQMVETSQ-SNVAQMIYRIPR 448
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -3
Query: 261 PDEETIKNAITL*PPPFHLITFIPSPMSHY*SNHRTFQ-NYHTNNGKFK 118
PDEETI AI + PF L + + R + NYH +NG F+
Sbjct: 225 PDEETIPTAIVIKNIPFSLKKEVLFKVFTALDIPRPYAFNYHFDNGVFR 273
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 27.1 bits (57), Expect = 2.6
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = -2
Query: 412 ANTPAVAGEDTPAPAPKPS-RGRFNRPSSRAVEPEAEEQNESVQPARSNRFSRRGNY*KC 236
A P V+ + P+ +PS +G SS ++ + RS + R NY
Sbjct: 252 AKYPTVSPTNEPSAHSRPSPQGTTANSSSASISSLHNTTPDGEGKYRSVQNGRALNYVSS 311
Query: 235 YNSLTTPISPHNIHSITNEPLLK 167
+NS + + S TNEP LK
Sbjct: 312 FNSDSHSPKDYISQSYTNEPGLK 334
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 25.8 bits (54), Expect = 6.0
Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Frame = -2
Query: 556 NNDLLEILKKKRAQAAEAKSRGSTVTEXXXXXXXXXXXAKSNYSGKKRANTPAVAGEDTP 377
NNDL ++KK+++ S G V + ++ + ++ ++ A
Sbjct: 62 NNDLASSIEKKKSELIVRNSEGLPVMDIHEEVDKDGNIISASVAPQRISSVIDYADVFRS 121
Query: 376 APAPKPSRGRFNRPSSRAVEPEAEEQ-NESVQ 284
P K NR +S +E +EE+ N+S +
Sbjct: 122 LPGFKNIENGGNRDTSSRIEELSEEEINDSTK 153
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = -3
Query: 324 PWNLKPKNRTSPFNQHDPTGSPDEETIKNAITL*PPPF 211
PW + + R P N EE +K + PPPF
Sbjct: 59 PWLMALRVREGPVNDISTIVQLYEEIVKTGFFINPPPF 96
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 522 RFFFRISSKSLLLLNGLTPPAISFLPSVED 611
R FRIS LLLL + ++S + S +D
Sbjct: 1544 RLLFRISVYDLLLLQSIAQASVSVISSYKD 1573
>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/61 (22%), Positives = 27/61 (44%)
Frame = -3
Query: 456 LVATLPNRITVVRNVPTHQPLPAKILLPPHRNLPEEDSTDHHQEPWNLKPKNRTSPFNQH 277
LV L N + ++ + T + L H++ ++H + N +P RT P+ +
Sbjct: 32 LVKKLSNLMARIKKIFTQEELKQIPCPYDHKHTIVRHRLEYHLKRCNARPVERTDPYYKK 91
Query: 276 D 274
D
Sbjct: 92 D 92
>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +1
Query: 25 KPXLICLDKVDHITIYCFFLCSLII--TNRNNHF 120
KP I LD HI + F LC L + T+R N F
Sbjct: 355 KPENILLDYTGHIALCDFGLCKLNMAKTDRTNTF 388
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,663,865
Number of Sequences: 5004
Number of extensions: 58592
Number of successful extensions: 208
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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