Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_L03
(359 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0400 - 8135283-8135490,8136047-8136213,8136289-8136477,813... 29 1.5
04_04_0500 - 25677767-25680850 28 2.5
10_07_0162 - 13713504-13714754,13716445-13716522 27 3.4
04_03_0314 - 14238620-14240128 27 4.4
11_01_0583 + 4636832-4637521 27 5.9
04_04_0051 - 22371490-22371658,22372333-22372778,22373880-223740... 26 7.7
02_05_0075 - 25610386-25610508,25610529-25610583,25610801-256112... 26 7.7
01_07_0374 + 43144861-43144998,43145695-43145794,43146499-431466... 26 7.7
01_01_0522 - 3834551-3835451,3835992-3836572 26 7.7
>03_02_0400 -
8135283-8135490,8136047-8136213,8136289-8136477,
8136560-8136655,8136746-8136874,8136947-8137123,
8137256-8137366,8138592-8138792,8139022-8139186,
8139293-8139527,8139618-8139745,8139833-8139928,
8140017-8140112,8140252-8140325,8140393-8140462,
8140556-8140665,8140753-8140906,8141040-8141155,
8141259-8141379,8141464-8141641,8142331-8142489,
8142619-8142732,8142821-8143000,8143098-8143177
Length = 1117
Score = 28.7 bits (61), Expect = 1.5
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +3
Query: 42 LFLTNLCNVLRSWCYHGGGSQL*YNASGH*IPVIRLG*SCNASRHYS--RCAEAEQRCHD 215
+F T L +++W Y GS++ Y+A GH + S + SR +S + E +
Sbjct: 518 IFSTALDGKIKAWLYDNLGSRVDYDAPGHWCTTMAY--SADGSRLFSCGTSKDGESHLVE 575
Query: 216 WDQKPSHAK 242
W++ K
Sbjct: 576 WNESEGAVK 584
>04_04_0500 - 25677767-25680850
Length = 1027
Score = 27.9 bits (59), Expect = 2.5
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -3
Query: 273 PNSQHRRRSRSLHGRVFDPNRGTSARLQRIGNN 175
P ++H + R+LHGR+ RG S L R+G++
Sbjct: 67 PRARHSQTCRALHGRIL---RGGSPLLGRLGDS 96
>10_07_0162 - 13713504-13714754,13716445-13716522
Length = 442
Score = 27.5 bits (58), Expect = 3.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 231 RVFDPNRGTSARLQRIGNNGGKHCSFSPVVLREFNGR 121
RV+DPN GT A+ ++ G +F L NG+
Sbjct: 339 RVYDPNTGTWAKFMDSKHHLGSSRAFEAAALVTLNGK 375
>04_03_0314 - 14238620-14240128
Length = 502
Score = 27.1 bits (57), Expect = 4.4
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 151 AEAAMLPAIIPDALKPSRGATIGIKNPPMQRTAPPTMLTIRAVKNP 288
+ ++ L + P + P R + + NPP APPT +R P
Sbjct: 6 SSSSSLSFLSPQPIHPRR---VRLPNPPPSTAAPPTPTAVRCTPAP 48
>11_01_0583 + 4636832-4637521
Length = 229
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 115 MLPAIKFP*YDWAEAAMLPAIIPDALKPSRGATIGIKNPPMQRTAPP 255
+L A KF Y W+ ++ A++P+ L + AT + +P + A P
Sbjct: 182 VLLATKFN-YIWSLLDLMEAVLPEYLSETGTATTTVPSPDVAAAAAP 227
>04_04_0051 -
22371490-22371658,22372333-22372778,22373880-22374054,
22374134-22374240,22374358-22374646,22374942-22375075,
22375228-22375423,22375611-22375719,22375839-22375965
Length = 583
Score = 26.2 bits (55), Expect = 7.7
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -1
Query: 356 MNSAGR*ICIVYLVRSYCDLRIMGFFTALIVNIVGGAVLCMG 231
M S + + + Y+V S+C +G A +V V A++ +G
Sbjct: 16 MGSVEQSLRVAYVVLSFCAAFFLGGIKAAVVGPVAAALMVLG 57
>02_05_0075 -
25610386-25610508,25610529-25610583,25610801-25611240,
25612951-25613619,25614551-25615870
Length = 868
Score = 26.2 bits (55), Expect = 7.7
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -2
Query: 175 WREALQLQPSRITGI*WPEALYQS*LPPP 89
W EAL L P + G P +LYQ L P
Sbjct: 192 WSEALNLSPPGVRGGALPPSLYQHLLRAP 220
>01_07_0374 + 43144861-43144998,43145695-43145794,43146499-43146651,
43147383-43150081
Length = 1029
Score = 26.2 bits (55), Expect = 7.7
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +1
Query: 178 IPDALKPSRGATIGIKNP---PMQRTAPPTMLTIRAVKNPMILKSQ*LLTRYT 327
+PDA P+ GA G P P+ R A + + +++ P K LL R T
Sbjct: 958 LPDADGPAAGAGAGATTPPPLPLTRVASKSKVPLQSFLFPAKAKKPSLLARVT 1010
>01_01_0522 - 3834551-3835451,3835992-3836572
Length = 493
Score = 26.2 bits (55), Expect = 7.7
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +1
Query: 175 IIPDALKPSRGATIGIKN--PPMQRTAPPTM 261
++P L+P+R A G K PP PPT+
Sbjct: 243 VVPKLLRPARSAAAGGKPPLPPPSSCVPPTI 273
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,743,310
Number of Sequences: 37544
Number of extensions: 228272
Number of successful extensions: 527
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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