Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_L03
(359 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81049-2|CAB02847.2| 576|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z73909-1|CAA98133.2| 1009|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z73907-2|CAA98125.2| 1009|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z73906-14|CAA98122.2| 1009|Caenorhabditis elegans Hypothetical p... 27 3.9
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 27 3.9
U52002-9|AAB37727.2| 839|Caenorhabditis elegans Human dice1 (de... 27 3.9
U52002-8|AAU05577.1| 842|Caenorhabditis elegans Human dice1 (de... 27 3.9
AF324832-1|AAL82897.1| 1009|Caenorhabditis elegans AEX-1 protein. 27 3.9
AB030946-1|BAA90483.1| 576|Caenorhabditis elegans high-affinity... 27 3.9
Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical pr... 26 9.1
AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin fami... 26 9.1
>Z81049-2|CAB02847.2| 576|Caenorhabditis elegans Hypothetical
protein C48D1.3 protein.
Length = 576
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -1
Query: 335 ICIVYLVRSYCDLRIMGFFTALIVNIVGGAVL 240
+C+VY+ RS + G+ L++ ++GG L
Sbjct: 424 LCVVYMPRSNTYGSLAGYAVGLVLRLIGGEPL 455
>Z73909-1|CAA98133.2| 1009|Caenorhabditis elegans Hypothetical protein
D2030.10a protein.
Length = 1009
Score = 27.1 bits (57), Expect = 3.9
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -3
Query: 120 KHYIKVDCRRHDSTNSVRHYISLSKTR 40
K +I+ RRH +++HYI +++ R
Sbjct: 976 KEFIETRTRRHQRIRALQHYIRINRNR 1002
>Z73907-2|CAA98125.2| 1009|Caenorhabditis elegans Hypothetical protein
D2030.10a protein.
Length = 1009
Score = 27.1 bits (57), Expect = 3.9
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -3
Query: 120 KHYIKVDCRRHDSTNSVRHYISLSKTR 40
K +I+ RRH +++HYI +++ R
Sbjct: 976 KEFIETRTRRHQRIRALQHYIRINRNR 1002
>Z73906-14|CAA98122.2| 1009|Caenorhabditis elegans Hypothetical
protein D2030.10a protein.
Length = 1009
Score = 27.1 bits (57), Expect = 3.9
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -3
Query: 120 KHYIKVDCRRHDSTNSVRHYISLSKTR 40
K +I+ RRH +++HYI +++ R
Sbjct: 976 KEFIETRTRRHQRIRALQHYIRINRNR 1002
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 27.1 bits (57), Expect = 3.9
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +1
Query: 103 NFDIMLPAIKFP*YDWAEAAMLPAIIPDALKPSRGATIGIKNPPMQR 243
NF IM P +++ + W+ + ++ L+ +RG T + + P++R
Sbjct: 465 NFHIMAPTLEYNTHPWSWSPCSAGMLERFLENNRGQTQCLFDQPVER 511
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 27.1 bits (57), Expect = 3.9
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +1
Query: 103 NFDIMLPAIKFP*YDWAEAAMLPAIIPDALKPSRGATIGIKNPPMQR 243
NF IM P +++ + W+ + ++ L+ +RG T + + P++R
Sbjct: 465 NFHIMAPTLEYNTHPWSWSPCSAGMLERFLENNRGQTQCLFDQPVER 511
>U52002-9|AAB37727.2| 839|Caenorhabditis elegans Human dice1
(deleted in cancer)homolog protein 1, isoform a protein.
Length = 839
Score = 27.1 bits (57), Expect = 3.9
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -3
Query: 228 VFDPNRGTSARLQRIGNNGGKH----CSFSPVVLREFNGRKHYIK 106
+FDPN+ T + ++G + C F P+ L RK YI+
Sbjct: 578 MFDPNKITLLDMAKLGTKARFNTLGLCFFHPIFLANSTSRKFYIQ 622
>U52002-8|AAU05577.1| 842|Caenorhabditis elegans Human dice1
(deleted in cancer)homolog protein 1, isoform b protein.
Length = 842
Score = 27.1 bits (57), Expect = 3.9
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -3
Query: 228 VFDPNRGTSARLQRIGNNGGKH----CSFSPVVLREFNGRKHYIK 106
+FDPN+ T + ++G + C F P+ L RK YI+
Sbjct: 581 MFDPNKITLLDMAKLGTKARFNTLGLCFFHPIFLANSTSRKFYIQ 625
>AF324832-1|AAL82897.1| 1009|Caenorhabditis elegans AEX-1 protein.
Length = 1009
Score = 27.1 bits (57), Expect = 3.9
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -3
Query: 120 KHYIKVDCRRHDSTNSVRHYISLSKTR 40
K +I+ RRH +++HYI +++ R
Sbjct: 976 KEFIETRTRRHQRIRALQHYIRINRNR 1002
>AB030946-1|BAA90483.1| 576|Caenorhabditis elegans high-affinity
choline transporterCHO-1 protein.
Length = 576
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -1
Query: 335 ICIVYLVRSYCDLRIMGFFTALIVNIVGGAVL 240
+C+VY+ RS + G+ L++ ++GG L
Sbjct: 424 LCVVYMPRSNTYGSLAGYAVGLVLRLIGGEPL 455
>Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical protein
W05B2.4 protein.
Length = 2265
Score = 25.8 bits (54), Expect = 9.1
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = -3
Query: 276 CPNSQHRRRSRSLH---GRVFDPNRGTSARLQRIGNN--GGKHCSFSPV 145
CPN+QH LH ++ + + + ++Q IG G + C + PV
Sbjct: 2104 CPNTQHLVSDEQLHTMGEQLIECEKNLATQMQTIGLRLPGQRMCKYLPV 2152
>AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin family
protein 10 protein.
Length = 2302
Score = 25.8 bits (54), Expect = 9.1
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 175 IIPDALKPSRGATIGIKNPPMQRTAPPTMLTIRAVKNPMILKSQ 306
+ PD+LK R + +KNP Q+ + +R + +P LK+Q
Sbjct: 858 LTPDSLKSLRLIGMTLKNPDSQK----INILVRLISSPEYLKNQ 897
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,696,010
Number of Sequences: 27780
Number of extensions: 176060
Number of successful extensions: 358
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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