Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_K22
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    57   3e-09
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    50   4e-07
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    48   2e-06
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    40   3e-04
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    40   6e-04
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    36   0.007
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    25   9.6  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   9.6  
SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|c...    25   9.6  

>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 28/78 (35%), Positives = 41/78 (52%)
 Frame = -3

Query: 809 IDFMATWXGPCKMIGPKLDEIXAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKNG 630
           +DF ATW GPCK I PK ++  +                  IA+E  +++MP+F   KNG
Sbjct: 23  VDFFATWCGPCKAIAPKFEQF-SNTYSDATFIKVDVDQLSEIAAEAGVHAMPSFFLYKNG 81

Query: 629 KKLDEFSGANVDXLXTTI 576
           +K++E  GAN   L  +I
Sbjct: 82  EKIEEIVGANPAKLEASI 99


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = -3

Query: 809 IDFMATWXGPCKMIGPKLDEIXAEMXXXXXXXXXXXXXXXXI-ASEYNINSMPTFVFVKN 633
           +D  A W GPCK I P   ++ ++                   AS   + +MPTFVF +N
Sbjct: 24  VDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFEN 83

Query: 632 GKKLDEFSGANVDXL 588
           GK++D  +GAN   L
Sbjct: 84  GKQIDMLTGANPQAL 98


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
           Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 24/82 (29%), Positives = 42/82 (51%)
 Frame = -3

Query: 809 IDFMATWXGPCKMIGPKLDEIXAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKNG 630
           +DF A W GPCK + P L+++ +E                 IA +  + ++PT V  + G
Sbjct: 40  VDFYADWCGPCKYLKPFLEKL-SEQNQKASFIAVNADKFSDIAQKNGVYALPTMVLFRKG 98

Query: 629 KKLDEFSGANVDXLXTTILKHK 564
           ++LD   GA+V  L + + K++
Sbjct: 99  QELDRIVGADVKTLSSLLAKYQ 120


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = -3

Query: 809 IDFMATWXGPCKMIGPKLDEIXAEMXXXXXXXXXXXXXXXXI-ASEYNINSMPTFVFVKN 633
           + F A W G CK + P+ +    E+                   SEY+I   PT    KN
Sbjct: 44  VKFYAPWCGHCKALAPEYESAADELEKDGISLVEVDCTEEGDLCSEYSIRGYPTLNVFKN 103

Query: 632 GKKLDEFSG 606
           GK++ ++SG
Sbjct: 104 GKQISQYSG 112



 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/64 (23%), Positives = 26/64 (40%)
 Frame = -3

Query: 809 IDFMATWXGPCKMIGPKLDEIXAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKNG 630
           ++F A W G CK + P  +++  E                   S  +I+  PT +F K  
Sbjct: 378 VEFYAPWCGHCKNLAPTYEKLAEEYSDDSNVVVAKIDATENDIS-VSISGFPTIMFFKAN 436

Query: 629 KKLD 618
            K++
Sbjct: 437 DKVN 440


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 22/78 (28%), Positives = 33/78 (42%)
 Frame = -3

Query: 809 IDFMATWXGPCKMIGPKLDEIXAEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKNG 630
           ++F A W  PCK +    D+  A+                 IA  +++N++P FV +   
Sbjct: 25  LNFYAPWAAPCKQMNQVFDQF-AKDTKNAVFLKIEAEKFSDIAESFDVNAVPLFVLIHGA 83

Query: 629 KKLDEFSGANVDXLXTTI 576
           K L   SGAN   L   I
Sbjct: 84  KVLARISGANPQKLKAAI 101


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
 Frame = -3

Query: 809 IDFMATWXGPCKMIGPKLDEIXA--EMXXXXXXXXXXXXXXXXIASEYNINSMPTFV-FV 639
           I+F ATW G CK + P  +E+ A  E                 +A +Y+I   PT + F 
Sbjct: 44  IEFYATWCGHCKSLAPVYEELGALFEDHNDVLIGKIDADTHSDVADKYHITGFPTLIWFP 103

Query: 638 KNGKKLDEFSGA-NVDXL 588
            +G +  ++S A +VD L
Sbjct: 104 PDGSEPVQYSNARDVDSL 121


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 434 NIFKFITDVKNIFSSFIKNVYMFFFF*FHLVSIGGC 541
           N   ++TD +NIF +F+ N   + F    L  I  C
Sbjct: 76  NSIDYLTDTQNIFPNFVNNENNYQFSTAPLNPIDAC 111


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 489 FLINEEKMFLTSVMNLKILIFSVC-SLWNAKN 397
           + +N +K+  +S+  L  LIF VC  LW +++
Sbjct: 223 YQLNLDKVIHSSLKKLSFLIFKVCIRLWGSQS 254


>SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 504 KNMYTFLINEEKMFLTSVMNLK 439
           +N Y +L+NE+  FLTS+  +K
Sbjct: 262 RNHYIYLLNEQVDFLTSIEIMK 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,566,063
Number of Sequences: 5004
Number of extensions: 46762
Number of successful extensions: 89
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)