Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_K21
         (395 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   3.9  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   6.8  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   6.8  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   6.8  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   6.8  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    20   9.0  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +2

Query: 212 VNPFCLAMIXNIMFYCYV*LTANVIKIIIS 301
           VN   L ++ NI+  C++ +  +++ III+
Sbjct: 77  VNNINLILLQNIIDICWITMVYSLLGIIIA 106


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 7   YTVENINYSKITIKNYFNKNHL 72
           Y   N NY+    K Y+N N++
Sbjct: 98  YNYNNNNYNNNCKKLYYNINYI 119


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 7   YTVENINYSKITIKNYFNKNHL 72
           Y   N NY+    K Y+N N++
Sbjct: 98  YNYNNNNYNNNCKKLYYNINYI 119


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 7   YTVENINYSKITIKNYFNKNHL 72
           Y   N NY+    K Y+N N++
Sbjct: 98  YNYNNNNYNNNCKKLYYNINYI 119


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 7   YTVENINYSKITIKNYFNKNHL 72
           Y   N NY+    K Y+N N++
Sbjct: 98  YNYNNNNYNNNCKKLYYNINYI 119


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 7   YTVENINYSKITIKNYFNKNHL 72
           Y   N NY+    K Y+N N++
Sbjct: 94  YNNYNNNYNNYNKKLYYNINYI 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,986
Number of Sequences: 438
Number of extensions: 1134
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)