Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_K18
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    33   0.022
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces...    27   1.5  
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce...    26   3.4  
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo...    25   7.8  

>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 33.5 bits (73), Expect = 0.022
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = -1

Query: 376 IGEYSIAYLEARMTRMEDILLNKIDQNSQRIVELKNTVVRSK 251
           +GE+S+ Y+     RME    N +  NS +I++LKN +++ K
Sbjct: 144 VGEHSVIYVSNNSIRME----NTLHDNSVQIIDLKNNILQKK 181


>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
 Frame = -1

Query: 526 LDNXDXDNKITHNNSADKCTNLENIXXTKIMELENSNVTSSLSKDPXLPSIGEYSIAYLE 347
           LD  D +   T        T L+ +  TKI   E S+V SSL+     P   + S    +
Sbjct: 83  LDKGDEETNETQQEDLLN-TLLQQMEDTKITTAEKSSVQSSLNTKENTPQQPKKSRNRQK 141

Query: 346 ARMTRMEDILLNKIDQ---NSQRIVELKN 269
            R+ R +  +    +Q    S+++ +LKN
Sbjct: 142 ERLERRKAEMKKMSEQAELESEKMADLKN 170


>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
 Frame = -1

Query: 343 RMTRMEDILLNKIDQNSQRIVELKNTVVRSKKKSVHT-QTAHT-DETYKKFLYNEISKYL 170
           R+ R++ +   K+ Q  +    L          SV T  T++  D  YK  + NE+ + L
Sbjct: 100 RLVRVDHVASYKVPQKEKEPANLVPLGESGSSLSVSTINTSNLPDHDYKTIIQNEVEQTL 159

Query: 169 SP-DSNSLI 146
           SP D   L+
Sbjct: 160 SPKDEKDLL 168


>SPAC23G3.05c |||regulator of G-protein signaling
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 343

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
 Frame = -1

Query: 382 PSIGEYSIAYLEARMT-RMEDILLNKIDQNSQRIVELKNTVVRSKKKSVHTQTAHTDETY 206
           P+ G   +  L    T    D+LL+K      R   LKN +  + +      T  + E  
Sbjct: 100 PNFGPLLLEELSNEQTINSSDLLLSK-----DRAAYLKNLLTSNIQSLTQESTVISKEQV 154

Query: 205 KKFLYNEISKYLSPDS 158
           K F    I KY +P S
Sbjct: 155 KMFTQIIIEKYFNPAS 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,939,055
Number of Sequences: 5004
Number of extensions: 35501
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)