Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_K18
         (571 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0534 - 20103908-20105897,20106314-20107116                       31   0.65 
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773...    30   1.5  
12_01_0676 + 5765154-5765241,5765329-5765453,5765533-5765604,576...    28   6.0  
07_01_0025 - 172742-173260,174559-174621,174701-174763,174852-17...    27   8.0  
01_04_0143 + 16689471-16689498,16689687-16689818,16689974-166900...    27   8.0  

>12_02_0534 - 20103908-20105897,20106314-20107116
          Length = 930

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
 Frame = -1

Query: 469 TNLENIXXTKIMELENSNVTSSLSKDPXLPSIGEYSIAYLE---ARMTRMEDILLNKIDQ 299
           T+L+ I  +   EL N ++   +S+D      G+  + + E       ++ D++L  I+Q
Sbjct: 455 TSLQEIGESYFNELINRSLIQPMSEDNFWDEDGKVHVFWDEDGKVHACKVHDMVLELINQ 514

Query: 298 NSQRIVELKNTVVRSKKKSVHTQTAHTDETYKKFLYNEISKYLSPDS 158
            S     +   +   ++   HT TA   +  +  L+N    Y SP++
Sbjct: 515 LSVEEDFVTTYLSDGQQTGKHTCTAQKKKIRRLSLHNSNKSYASPEA 561


>10_08_0829 - 20871810-20872011,20873226-20873359,20873480-20877313,
            20878057-20878177,20878414-20878451,20879096-20879218,
            20879308-20879505,20880270-20880356
          Length = 1578

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 27/113 (23%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
 Frame = -1

Query: 559  NMKLRDVIESCLDNXDXDNKITHNNSADKCTNLENIXXTKIMELENSNVTSSL--SK-DP 389
            ++K   +  +CLD    +  +   +S D   +  N+  TKI ELE+  V   L  SK + 
Sbjct: 724  SLKECSITAACLDEM-REELLLLTSSIDSHVSTNNVLETKITELESCKVNLELHISKLEH 782

Query: 388  XLPSIGEYSIAYLEARMTRM---EDILLNKIDQNSQRIVELKNTVVRSKKKSV 239
                + E+ I+ LE+++T +   +++ + ++D++   I  LK+ + + + + V
Sbjct: 783  ENVELSEF-ISGLESQLTYLANEKELSMLQMDESRSLITNLKDELEQVEAQKV 834


>12_01_0676 +
           5765154-5765241,5765329-5765453,5765533-5765604,
           5765728-5765802,5765880-5765905,5766709-5766870,
           5766963-5767037,5767133-5767204,5767289-5767363,
           5767461-5767529,5767839-5767910,5768030-5768161,
           5768430-5768920,5769315-5769476,5769570-5769709,
           5769818-5770037,5770398-5770633,5771560-5772051
          Length = 927

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -1

Query: 469 TNLENIXXTKIMELENSNVTSSLSKDPXLPSIGEYSIAYLE 347
           TNL+N+       L NSN+T  L   P L  +   S  YLE
Sbjct: 246 TNLKNLTKLAEFHLANSNLTGPL---PDLTGMSSLSFVYLE 283


>07_01_0025 -
           172742-173260,174559-174621,174701-174763,174852-174950,
           175792-175818,175946-176251
          Length = 358

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = -1

Query: 382 PSIGEYS-IAYLEARMTRMEDILLNKIDQNSQRIVELKNTVVRSKKKSVHTQTAHTDETY 206
           P  GE   +  +  R   ++++ +N +D +S   V   N +   KK  VH++T  +   +
Sbjct: 149 PEHGEIDGVLSVVLRKMIVQEVKMNLVDTSS---VNFHNPI--DKKSKVHSKTEPSYSRF 203

Query: 205 KKFLYNEISKYLSPDSNSLI 146
               ++ +   LSPD   +I
Sbjct: 204 STKYFSTVLSSLSPDQKRII 223


>01_04_0143 +
           16689471-16689498,16689687-16689818,16689974-16690013,
           16690214-16690280,16690349-16690431,16690755-16690821,
           16692741-16692821,16693696-16693791,16694172-16694198
          Length = 206

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/49 (22%), Positives = 22/49 (44%)
 Frame = +1

Query: 148 LSCCYRGSGILIFHCRGTSCKFRQCELFEYGLIFFLNAQLYFLVQQFVE 294
           L+C   GS +++  C   +     C    + ++  L  + YF  Q +V+
Sbjct: 86  LTCTINGSSLVMIWCCHLANNSANCYFLHFTIVQHLKKKFYFHFQDYVD 134


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,977,389
Number of Sequences: 37544
Number of extensions: 179035
Number of successful extensions: 390
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)