Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_K18
         (571 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   0.92 
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    24   1.2  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    24   1.2  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   4.9  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 24.2 bits (50), Expect = 0.92
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
 Frame = -1

Query: 379 SIGEYSIAYLEARMTRMEDILLNKIDQNSQRIVELKNTV-----VRSKKKSVHTQTA-HT 218
           S  EY   Y+++  T   D      D  S   +ELK +      V S+ K++    A H 
Sbjct: 370 STPEYDDTYMDSGYTNEIDFSFP--DSVSDYPLELKGSPDGFESVTSQYKNIREDDARHI 427

Query: 217 DETYKKFLYNEISKYLSPDSNSLIYXELFISKYAQKS 107
                    N + +YLSPD  S +    FI+++ + +
Sbjct: 428 PHASVTDSENTVPRYLSPDVISALKGVRFIAQHIKNA 464


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 102 KFLHRLKNVAKGNDSHKCYERFMKINVNSTS 10
           K+L  ++NV   N+   C +RF+  + N+ S
Sbjct: 323 KYLQLIENVIPSNEELICDKRFVDESANNLS 353


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 102 KFLHRLKNVAKGNDSHKCYERFMKINVNSTS 10
           K+L  ++NV   N+   C +RF+  + N+ S
Sbjct: 338 KYLQLIENVIPSNEELICDKRFVDESANNLS 368


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -3

Query: 275 KKYSCAFKKKISPYSNSSH*RNLQE 201
           K+YSC+ +++   Y N +  R  +E
Sbjct: 270 KRYSCSREREQKSYKNENSYRKYRE 294


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,763
Number of Sequences: 438
Number of extensions: 2823
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)