Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_K13
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0971 + 7498971-7499477,7499578-7499715,7500653-7500732,750...    28   6.2  
05_05_0016 - 21542300-21542886,21542956-21543286,21543310-215434...    28   8.1  

>06_01_0971 +
           7498971-7499477,7499578-7499715,7500653-7500732,
           7501175-7501584,7503650-7503834,7504280-7504365,
           7504641-7504774,7506491-7506790,7506999-7507147,
           7507762-7507845
          Length = 690

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -2

Query: 512 FDVCW*IRKKKNAFYVDCVACLVVCVITVAGSIFLSIKSLIRIL 381
           FD  W  +   NAFY D   CL V + +    I  ++  LI+IL
Sbjct: 400 FDSYWKYKSTPNAFYEDAEKCLRVALYSTP-PIMAALLPLIQIL 442


>05_05_0016 -
           21542300-21542886,21542956-21543286,21543310-21543419,
           21543526-21544069,21544190-21544345
          Length = 575

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 461 NQHKKRFFFF*STNKHQNQFSKFKTRLDF*EHSK 562
           N H + F +F S +++  Q SKF  RL+F  HSK
Sbjct: 82  NPHAEDFAYFHSISRYTKQNSKF-GRLNFYPHSK 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,825,507
Number of Sequences: 37544
Number of extensions: 261186
Number of successful extensions: 423
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)