Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_K12
(570 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0256 - 2083973-2084816,2084922-2086093 30 1.1
02_04_0258 + 21339682-21339806,21340635-21340730,21340905-213409... 30 1.5
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 29 2.6
02_01_0579 - 4293528-4294117,4294561-4294762,4296145-4296348,429... 29 2.6
03_04_0122 + 17465804-17465893,17466028-17466147,17466287-174663... 28 4.6
07_01_0004 + 35300-35533,35617-35732,39044-39287,39451-40578,406... 27 8.0
01_05_0495 + 22705697-22705765,22705903-22706025,22708429-227085... 27 8.0
>01_01_0256 - 2083973-2084816,2084922-2086093
Length = 671
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 357 NQNAYGNGATKPYLPYSNYLPSQNPQSLPYPVGPLNMPMP 238
NQ+ N AT ++P +Y PQ P P P +P P
Sbjct: 476 NQHFIHNPATGTFIPIQSYYHHPVPQQAPQPPMPQPVPQP 515
>02_04_0258 +
21339682-21339806,21340635-21340730,21340905-21340980,
21341085-21341143,21341280-21341380,21341447-21341773,
21341861-21342021,21342100-21342303,21342735-21342966,
21343629-21344239
Length = 663
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = -1
Query: 462 KMGVDKFLEDFEPIRKQMHIRKYKAEKMSELLRNSNQNAYGNGATKPYLPYSNYLPSQNP 283
+ GVD +L E IR + H + E+M ++LR + T+ + NY+PS P
Sbjct: 559 RSGVDDYL--MEEIRMRSH-EILENEEMQQMLRILSMGGASTNLTEDGFAFPNYMPSTPP 615
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 29.1 bits (62), Expect = 2.6
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = -1
Query: 450 DKFLEDFEPIRKQMHIRKYKAEKMSELLRN-SNQNAYGNGATKPYLPYSNYLPSQNPQSL 274
DKF ++P +KQ ++ Y + E + + NG+ P P +P PQ+
Sbjct: 221 DKFFNYWDPDKKQYILQLYFKTRQPEANKPPAAPGTLPNGSGGPPRPPPPQVPPPPPQAP 280
Query: 273 PYPVGPLNMPM 241
P P P N PM
Sbjct: 281 PPP--PPNAPM 289
>02_01_0579 -
4293528-4294117,4294561-4294762,4296145-4296348,
4296425-4296585,4296665-4297158,4297526-4297584,
4297766-4297841,4298511-4298552,4298757-4298860,
4299071-4299280
Length = 713
Score = 29.1 bits (62), Expect = 2.6
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = -1
Query: 528 LQTAAAESEE-QSDNIARDFLSGKMGVDKFLEDF-EPIRKQMHIRKYKAEKMSELLRNSN 355
LQ A ++S+ Q N+ D + +F +DF E IR + H + ++E M +LLR +
Sbjct: 584 LQQAISQSQSIQPANVGYDDWTRSQN-GQFADDFTEDIRMKSH-QMLESEDMQQLLRVFS 641
Query: 354 QNAYGNGATKPYLPYSNYLPSQNP 283
+ + Y+PS P
Sbjct: 642 MGGASTSLQEDAFGFPTYMPSPLP 665
>03_04_0122 +
17465804-17465893,17466028-17466147,17466287-17466317,
17466978-17467153,17468051-17468142,17468259-17468340,
17468498-17468566,17468655-17468759,17471246-17471342,
17471438-17471676,17472191-17472949,17473079-17473297
Length = 692
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 357 CCFSTILTFSRLCTSLYAFVYGWVQNLLEIYQH 455
C I+TF +C+ + A VY W+ N + H
Sbjct: 374 CRHPNIITFIGVCSKISALVYEWLPNGRNLEDH 406
>07_01_0004 +
35300-35533,35617-35732,39044-39287,39451-40578,
40657-40833
Length = 632
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 327 KPYLPYSNYLPSQNPQSLPYPVGPLNMPM 241
+P+ PY + P P SL Y V PL+MP+
Sbjct: 389 QPFKPYYCWCPPC-PSSLQYSVTPLHMPV 416
>01_05_0495 + 22705697-22705765,22705903-22706025,22708429-22708586,
22709162-22709206,22709367-22709445,22709522-22709595,
22709703-22709809,22711116-22711301,22711882-22711920,
22712020-22712086,22712207-22712281,22713113-22713347,
22713425-22713755,22714530-22714710,22714810-22714950,
22715041-22715302,22715503-22715892,22717179-22717735,
22718421-22718557,22718672-22718853,22718959-22719339,
22719420-22719545,22719635-22719700,22720056-22721839,
22721914-22722193,22722386-22722616,22723067-22723588,
22723683-22723815,22723937-22724193
Length = 2405
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = -1
Query: 513 AESEEQSDNIARDFLSGKMGVDKFLEDFEPIRKQMHIRKYKAEKMSELL 367
++ +Q + RD L +G +KF+E + +RK + +K ++ K SE L
Sbjct: 2320 SDDVKQLADSVRDKLCDLIGTEKFVEVYNSVRKGLK-QKRESRKQSEKL 2367
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,808,756
Number of Sequences: 37544
Number of extensions: 234237
Number of successful extensions: 575
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -