Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_K06
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    26   5.5  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   7.3  
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch...    25   9.7  

>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -2

Query: 312 NVASIYLMCKFIATTINILHCILVLLIVEIHFCK 211
           N A   L C+F   ++  + C+L+L ++E+  C+
Sbjct: 191 NQAFSLLPCRFQDISLTNITCLLLLCLIELGSCR 224


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -2

Query: 468 PVNLYFNVRIFV*TKLNGQCDINV*LNIKYELD-L*IACQYSH 343
           P+N+++   +   T  N +C ++   N  YE+D + IAC  SH
Sbjct: 791 PLNIHYEKFVSKVTIENDKCTLDCKDNSSYEVDQVVIACSPSH 833


>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 482 LTTVDL*IYILTFVSSCKQN*MDNVILMCN 393
           LT  +L +  LT  +SC+Q    +V+ +CN
Sbjct: 284 LTKEELLLRCLTLTTSCRQIKRSSVVSLCN 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,250,604
Number of Sequences: 5004
Number of extensions: 40778
Number of successful extensions: 72
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)