Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_K04
         (357 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099924-2|AAC68811.1|  189|Caenorhabditis elegans Hypothetical ...    28   1.7  
AF016424-7|AAB65329.3|  520|Caenorhabditis elegans Hypothetical ...    26   6.7  

>AF099924-2|AAC68811.1|  189|Caenorhabditis elegans Hypothetical
           protein K07A9.3 protein.
          Length = 189

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 295 GKDDKEDTGF-GFKDKAKAEDTLRLLEEHDLNYRRLTVRGLLGR 167
           G DD   T F    DKAK   +++ +  HD+N+R   ++ L G+
Sbjct: 23  GLDDFGRTDFLRIYDKAKKNKSIKSITRHDVNFRAYILQVLHGK 66


>AF016424-7|AAB65329.3|  520|Caenorhabditis elegans Hypothetical
           protein F39G3.3 protein.
          Length = 520

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 146 DESRRENQKHQRGHGGVRELARGPRQEQG 60
           D  R  N+ HQ     VR+  R P + QG
Sbjct: 27  DSGRTNNRSHQGRRSPVRQTGRSPVRRQG 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,075,471
Number of Sequences: 27780
Number of extensions: 45260
Number of successful extensions: 147
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)