Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_K04
         (357 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   1.1  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   1.1  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          23   1.1  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   5.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   7.6  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -3

Query: 277 DTGFGFKDKAKAEDTLRLLEEHDLNYRRLTVRGLLGRAKRVLSM 146
           + G   +  AKA++T+    ++ LN++  T   ++   K V  M
Sbjct: 470 NNGVSIQSHAKAKNTMIKARQYRLNHKPFTYHIVVNSDKNVKGM 513


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -3

Query: 277 DTGFGFKDKAKAEDTLRLLEEHDLNYRRLTVRGLLGRAKRVLSM 146
           + G   +  AKA++T+    ++ LN++  T   ++   K V  M
Sbjct: 470 NNGVSIQSHAKAKNTMIKARQYRLNHKPFTYHIVVNSDKNVKGM 513


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -3

Query: 277 DTGFGFKDKAKAEDTLRLLEEHDLNYRRLTVRGLLGRAKRVLSM 146
           + G   +  AKA++T+    ++ LN++  T   ++   K V  M
Sbjct: 96  NNGVSIQSHAKAKNTMIKARQYRLNHKPFTYHIVVNSDKNVKGM 139


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
 Frame = -3

Query: 262 FKDKAKAEDTLRLLEEHDLNYR---------RLTVRGLLGRAKRVLSMT 143
           F+DK +  DTL + E  +  YR          L  RG  G  KR+L  T
Sbjct: 25  FQDKHEQSDTLYVCEFCNRRYRTKNSLTTHKSLQHRGSSGMLKRLLKTT 73


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 129 FSSAFVIDRTLFALPRSPL 185
           FS    +DR+   LPR P+
Sbjct: 6   FSKISKVDRSTSPLPRKPV 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,802
Number of Sequences: 438
Number of extensions: 469
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)