Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_K02
         (438 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    27   0.96 
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    26   2.9  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    25   5.1  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    25   5.1  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    24   8.9  
SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc...    24   8.9  

>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 27.5 bits (58), Expect = 0.96
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 200 HDWDQKPSHAKNGSAYDVDY*GSEK 274
           HD  ++PSH K+ SA  +D   S K
Sbjct: 229 HDHGERPSHVKDASAQHIDLLSSTK 253


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 173 GNNGGKHCSFSPVVLREFNGRKHYIKVDCRRH 78
           G++    C    +V+   NGR+ Y++   RRH
Sbjct: 485 GHHKNPKCRAKKLVVESRNGRREYVQDAVRRH 516


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +1

Query: 289  SHSNFSPDIQY--KLTLDNLYLFIDQQFLDNSGAQCSVLPLETTSSAGR 429
            S+ N   D++    +++DN   FI++ F D     C   P    S AGR
Sbjct: 1721 SNENVGVDVELVSAISIDN-ETFIERNFTDTERKYCFAAPNPQASFAGR 1768


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 275 IFHCPNSQHRRRSRSLHGRVFD 210
           +FHC +S HR    +LH R  D
Sbjct: 477 VFHCEHSAHRAPHLALHFRNTD 498


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 261 RAVKNPMILKSQ*LLT 308
           RAVKNPMIL+ +  LT
Sbjct: 12  RAVKNPMILEKERQLT 27


>SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 349

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +1

Query: 4   TF*IQNVLTSSSYLVFDKL 60
           T+ ++ V+ S+SYL+FD+L
Sbjct: 64  TYAVRQVVQSNSYLLFDEL 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,766,043
Number of Sequences: 5004
Number of extensions: 34137
Number of successful extensions: 80
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)