Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_J21
         (811 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       54   1e-09
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    25   1.1  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   1.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   1.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.7  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 54.4 bits (125), Expect = 1e-09
 Identities = 23/48 (47%), Positives = 32/48 (66%)
 Frame = -3

Query: 659 SRGIDFQHVSNVINFDFPLDVNSYVHRAGRTARGNNQGSVLSFVSIRE 516
           +RG+D ++VS+VIN+D P  ++ YVHR GRT R  N+G   SF    E
Sbjct: 512 ARGLDIKNVSHVINYDLPKGIDEYVHRIGRTGRVGNRGRATSFFDPEE 559


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -3

Query: 356 RLKEIKQELLNCKKLQGYF 300
           ++ E+++E+LN +KLQG F
Sbjct: 284 KISELEKEMLNGQKLQGPF 302


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = -3

Query: 509 LMDAVEQHLSNGFK-GQKVLQKYEFALEEVEGFRYRSRDAWRAVTRIAVREARLKEIKQE 333
           + D + + L  G + G   L++ + AL+ +EG RY           +  R+ +LK +  +
Sbjct: 678 ISDRLSRDLYCGIRAGLSWLERIQIALDVLEGIRYLHSQG------LVHRDVKLKNVLLD 731

Query: 332 LLNCKKLQGY 303
           + N  KL  +
Sbjct: 732 IENRAKLTDF 741


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = -3

Query: 509 LMDAVEQHLSNGFK-GQKVLQKYEFALEEVEGFRYRSRDAWRAVTRIAVREARLKEIKQE 333
           + D + + L  G + G   L++ + AL+ +EG RY           +  R+ +LK +  +
Sbjct: 716 ISDRLSRDLYCGIRAGLSWLERIQIALDVLEGIRYLHSQG------LVHRDVKLKNVLLD 769

Query: 332 LLNCKKLQGY 303
           + N  KL  +
Sbjct: 770 IENRAKLTDF 779


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 14/66 (21%), Positives = 27/66 (40%)
 Frame = -2

Query: 393  VARRHQDSSQRS*TQRDQTGAPQL*KVTRLLRGEPIRSGSVKKGQGTAHCEGAATFGTCT 214
            + ++ Q   Q+   Q+ Q    Q  +  +    E + +G  +   GT++  GAA      
Sbjct: 1207 MVQQQQQQQQQQQQQQQQQQQQQQQQQHQAREREGVGAGIAETSAGTSNSRGAAQMSKVP 1266

Query: 213  RIPASG 196
            R  + G
Sbjct: 1267 RDVSEG 1272


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,597
Number of Sequences: 438
Number of extensions: 4491
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)