Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_J20
(535 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce... 37 0.002
SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 32 0.047
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 28 1.0
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3... 28 1.0
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 27 2.3
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 5.4
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 25 5.4
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S... 25 5.4
SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3 |Sc... 25 7.1
SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|c... 25 7.1
>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 36.7 bits (81), Expect = 0.002
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = -3
Query: 530 DKFLEGQKYVAGPNLTVADLSLIASVSSLEASDIDFKKYANVKRWYETVKSTAPGYQEAN 351
D L +Y AG T AD + + + + + K Y N+KRW V S P + A
Sbjct: 152 DNHLASNEYFAGEQFTAADPQMCFPIFAAQRDYLSQKPYKNIKRWMRVV-SDRPACRIAA 210
Query: 350 EK 345
EK
Sbjct: 211 EK 212
>SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 32.3 bits (70), Expect = 0.047
Identities = 16/48 (33%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = -1
Query: 346 KDWRHSRDLSIACLKSE-HLSTRNENLFKITSLELNLTN*AELKRHCL 206
K+ H++ +S+ CL S+ +L ++ +FK ++ELN N ++KR+ L
Sbjct: 58 KNHLHNKHVSLYCLLSDRYLQPPSKRIFKRWNMELNNLNCPDIKRYIL 105
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 27.9 bits (59), Expect = 1.0
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 297 SLFKHAIDKSLECLQSFLVGLLVTRSCTLNRLVPS 401
S +K++++ L CL +L+ +TRS T+ + V S
Sbjct: 51 SWYKYSLESGLVCLYLYLIYRWITRSFTVKQTVGS 85
>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 334
Score = 27.9 bits (59), Expect = 1.0
Identities = 17/60 (28%), Positives = 24/60 (40%)
Frame = -3
Query: 512 QKYVAGPNLTVADLSLIASVSSLEASDIDFKKYANVKRWYETVKSTAPGYQEANEKGLEA 333
+KY P L LS A+ S+ S + + WY+ V G E +E EA
Sbjct: 139 EKYGEQPTLAQKKLSNAAAAKSVPGSSSSSSDPMHPQHWYDRVLEGLVGANENSENNREA 198
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 26.6 bits (56), Expect = 2.3
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -3
Query: 410 NVKRWYETVKSTAPGYQEANEKGLEAFKGLVNS 312
+V + YE+++S Y+ ANEK EA +V+S
Sbjct: 739 SVHKNYESLRSQLLEYKAANEKHTEAILSVVSS 771
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 527 KFLEGQKYVAGPNLTVADLSLIASVSSLEASDI 429
+F Q+Y+ + DL ++A SLEA DI
Sbjct: 459 EFQSTQRYLVLSEIGETDLDILAEPKSLEACDI 491
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +3
Query: 60 KWVSHDKKRNVSIKCEQIILNLLIYFQAKG 149
+W+ KK+ + +CE +IL++L + + G
Sbjct: 1158 EWILITKKKVILEQCEYVILDILNFLKFSG 1187
>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
Spo6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 5.4
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 315 IDKSLECLQSFLVGLLVTRSCTLNRLVPSLNVGVFLE 425
++ S CLQS L G V + + VPS NV F E
Sbjct: 216 VNTSASCLQSLLDGEKVYGTSDKDFYVPSKNVEYFRE 252
>SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 297
Score = 25.0 bits (52), Expect = 7.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 351 VGLLVTRSCTLNRLVPSLNVGVFLEVNVRG 440
VGL TR+C ++ P +V +FL G
Sbjct: 82 VGLEYTRNCDCDQYCPKCSVELFLNAKCTG 111
>SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 169
Score = 25.0 bits (52), Expect = 7.1
Identities = 14/61 (22%), Positives = 32/61 (52%)
Frame = +3
Query: 234 LVKFNSSDVILNKFSFRVDKCSLFKHAIDKSLECLQSFLVGLLVTRSCTLNRLVPSLNVG 413
LV++NS + L + ++ S ++A+++ Q+F L+ R + N+L ++ V
Sbjct: 77 LVEYNSINAELESVNSKISSISSQEYALEEFQALSQNFEKNLVQHRRNSQNKLKCAMEVN 136
Query: 414 V 416
+
Sbjct: 137 I 137
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,935,070
Number of Sequences: 5004
Number of extensions: 34232
Number of successful extensions: 116
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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