Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_J19
         (339 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyce...    72   3e-14
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    27   0.78 
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    26   1.8  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    25   2.4  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    25   3.2  
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    25   3.2  
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    25   4.2  
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe...    25   4.2  
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch...    24   7.3  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    24   7.3  
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    23   9.6  
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    23   9.6  

>SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 71.7 bits (168), Expect = 3e-14
 Identities = 36/65 (55%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
 Frame = -3

Query: 193 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTDK-MYVXCGAI 17
           M+N+AG+ VDLY PRKCSA+NR+I AKDHASVQ+ +  VD A GR    +K  Y   G +
Sbjct: 1   MENEAGQLVDLYVPRKCSATNRIIQAKDHASVQINVCAVD-AEGRQIPGEKTTYAISGFV 59

Query: 16  RRMGE 2
           R  GE
Sbjct: 60  RSKGE 64


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 27.1 bits (57), Expect = 0.78
 Identities = 19/80 (23%), Positives = 34/80 (42%)
 Frame = -3

Query: 334 EFGRPMICQFRVPCGRVGFSCFIDILSTFRRVLTVKLLKNFPLQTYKMQNDAGEFVDLYC 155
           EFG+  +    +P G++     +DILS     LT +       +  K Q  A   +  YC
Sbjct: 13  EFGKGTVATDNIPIGKIIIRKRVDILSLDSANLT-RTCSTCTEEKVKTQRCAACKIIHYC 71

Query: 154 PRKCSASNRLIHAKDHASVQ 95
            + C  ++   H  +  ++Q
Sbjct: 72  SKGCQKADWPFHKLECKALQ 91


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 93  SCTEAWSLAWMRRLLAEHFLGQYKST 170
           S T+A SL W  +   +H + Q+KST
Sbjct: 649 SATKAHSLGWEFKANDDHIIRQFKST 674


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 111 SLAWMRRLLAEHFLGQYKSTNSPASFCILYV 203
           SL  M  +L EH+ G++    SP   CI+ V
Sbjct: 575 SLERMIAILTEHYAGKWPFWMSPRQVCIIPV 605


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 12/54 (22%), Positives = 22/54 (40%)
 Frame = +3

Query: 42  LSVSAARPVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYV 203
           L+VS+      S   ++     W+  W    L E F+   + TN+     + Y+
Sbjct: 170 LAVSSNSSTVSSLELVSQIASIWAFDWPMMNLQETFIYWDRCTNACLRLLLCYI 223


>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 34  HTFYLCQQHDLWRGLR 81
           H  +L QQ D W+G+R
Sbjct: 92  HLAFLIQQDDFWKGIR 107


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 229 KLLKNFPLQTYKMQNDAGEFVDLYC 155
           + +  F   TYK  ND GEF   YC
Sbjct: 196 RFMDGFSSHTYKFVNDKGEF--YYC 218


>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 563

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 12/47 (25%), Positives = 19/47 (40%)
 Frame = +3

Query: 63  PVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYV 203
           P+     A+T  TE W++A+    +A  F     S       C  Y+
Sbjct: 482 PILQKICAVTRTTETWAVAFAHYEMAVAFFESNGSKKEGLKHCDAYL 528


>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
 Frame = -3

Query: 220 KNFPLQTYKMQNDAGEFVDLYCPRKCSASNRLIHAKD--HASVQ--LVIADVDPATGRAA 53
           K+F   T    ND G    L C R+ +AS+      D   +SVQ  +V+    P  G   
Sbjct: 57  KDFVYFTLPFPNDEGTVFGLSCTRQLNASSLKNIPSDVTRSSVQKAVVVITTSPPFGHIK 116

Query: 52  D 50
           D
Sbjct: 117 D 117


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 168 TNSPASFCILYVCNGKFLSNFTVKTRRNVD 257
           T SP++FC L VC  +F++       +++D
Sbjct: 435 TVSPSNFCALEVCALQFVNGVHKSVVKHLD 464


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 208 LQTYKMQNDAGEFVD 164
           +Q  K QND GEF+D
Sbjct: 269 IQLAKTQNDLGEFLD 283


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
 Frame = +2

Query: 17  DRPTXN--IHFICVSSTTCGGVYVSN 88
           D PT +  I   C     CGG+Y +N
Sbjct: 214 DEPTRHDIIRHACPGGGACGGMYTAN 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,404,149
Number of Sequences: 5004
Number of extensions: 24903
Number of successful extensions: 78
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)