Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_J19
         (339 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191     64   3e-11
03_05_0610 - 26108546-26108671,26108739-26108789,26109410-261095...    62   8e-11
02_05_1349 + 35841694-35843738,35844506-35844624,35844932-358450...    31   0.30 
11_06_0129 - 20397179-20397537,20397749-20400497                       26   6.6  
04_03_0142 + 11773124-11774158                                         26   6.6  
02_03_0229 + 16617371-16617970                                         26   6.6  
03_05_0294 + 22855503-22855946,22856346-22856399                       26   8.7  

>03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191
          Length = 82

 Score = 64.1 bits (149), Expect = 3e-11
 Identities = 33/64 (51%), Positives = 40/64 (62%)
 Frame = -3

Query: 193 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTDKMYVXCGAIR 14
           MQN+ G+ VDLY PRKCSA+NR+I AKDHASVQ+ I  VD   G        +   G IR
Sbjct: 1   MQNEEGQMVDLYVPRKCSATNRIITAKDHASVQINIGHVD-ENGLYDGRFTTFALSGFIR 59

Query: 13  RMGE 2
             G+
Sbjct: 60  AQGD 63


>03_05_0610 -
           26108546-26108671,26108739-26108789,26109410-26109542,
           26109633-26109682
          Length = 119

 Score = 62.5 bits (145), Expect = 8e-11
 Identities = 32/64 (50%), Positives = 39/64 (60%)
 Frame = -3

Query: 193 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTDKMYVXCGAIR 14
           MQN+ G+ VDLY PRKCS +NR+I AKDHASVQ+ I  VD   G        +   G IR
Sbjct: 1   MQNEEGQMVDLYVPRKCSTTNRIITAKDHASVQINIGHVD-ENGLYDGRFTTFALSGFIR 59

Query: 13  RMGE 2
             G+
Sbjct: 60  AQGD 63


>02_05_1349 +
           35841694-35843738,35844506-35844624,35844932-35845075,
           35845189-35845310,35845474-35845609,35845861-35845957,
           35846727-35846899,35847099-35847262,35847466-35847537,
           35847833-35847928,35847999-35848124
          Length = 1097

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = -1

Query: 201 HIKCRTTPVNSLTCTARGNARPATASST 118
           H++CR+TP +SLT     N  PA++SS+
Sbjct: 81  HLRCRSTPRDSLTYNTLLNHLPASSSSS 108


>11_06_0129 - 20397179-20397537,20397749-20400497
          Length = 1035

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 45  SVSAARPVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFC 191
           S + A   AGS+S+  +  +  +L   + +L+   LG   S NS + FC
Sbjct: 12  SYALALVSAGSSSSSNATADELALLSFKSMLSSPSLGLMASWNSSSHFC 60


>04_03_0142 + 11773124-11774158
          Length = 344

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +3

Query: 39  ILSVSAARPVAGSTSAITSCTEAWSLAWM 125
           ++++ AA P+A ++SA+   T A+ LAW+
Sbjct: 42  VVALLAAAPLAFTSSAMLRGTSAFFLAWL 70


>02_03_0229 + 16617371-16617970
          Length = 199

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 11  PSDRPTXNIHFICVSSTTCGGVYVS 85
           P+D P   +H IC ++   GG+ +S
Sbjct: 62  PTDDPVVTLHAICATNADVGGLRLS 86


>03_05_0294 + 22855503-22855946,22856346-22856399
          Length = 165

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 124 IHAKDHASVQLVIADVDPATG-RAADTDKMYV 32
           +HA     VQLV+AD  PA G R A  D +++
Sbjct: 87  LHAFAEQVVQLVLADSSPAGGPRVAFADGVFI 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,541,893
Number of Sequences: 37544
Number of extensions: 170259
Number of successful extensions: 503
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)