Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_J19
         (339 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal prot...    88   2e-18
AC006816-6|ABA00154.1|  506|Caenorhabditis elegans Hypothetical ...    29   1.1  
Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr...    27   4.5  
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ...    27   4.5  
AC024747-3|AAK85498.2|  318|Caenorhabditis elegans Hypothetical ...    26   6.0  
Z81533-4|CAB04338.1|  280|Caenorhabditis elegans Hypothetical pr...    26   7.9  

>U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 21 protein.
          Length = 88

 Score = 87.8 bits (208), Expect = 2e-18
 Identities = 42/65 (64%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
 Frame = -3

Query: 193 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGR-AADTDKMYVXCGAI 17
           MQNDAG+ V+LY PRKCS+SNR+I  KDHASVQ+   DVDP TGR        Y  CGAI
Sbjct: 1   MQNDAGQTVELYVPRKCSSSNRIIGPKDHASVQIDFVDVDPETGRMIPGKSTRYAICGAI 60

Query: 16  RRMGE 2
           RRMGE
Sbjct: 61  RRMGE 65


>AC006816-6|ABA00154.1|  506|Caenorhabditis elegans Hypothetical
           protein Y71D11A.1 protein.
          Length = 506

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 111 SLAWMRRLLAEHFLGQYKSTNSPASFCILYVCNGKFLSNFTV 236
           S  W+ RL A   L  Y ST   A+  +  +CNG     FT+
Sbjct: 92  SATWLVRLSASLSLPVYPSTLKEANLFVTVICNGYAYPLFTL 133


>Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical
           protein C08F8.4 protein.
          Length = 540

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 108 WSLAWMRRLLAEHFLGQYKS 167
           W++AW+RR++ E   G Y++
Sbjct: 359 WTVAWLRRVVYERVEGPYRT 378


>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical protein
            F40E10.4 protein.
          Length = 1410

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/74 (21%), Positives = 29/74 (39%)
 Frame = +3

Query: 24   PQXTYILSVSAARPVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYV 203
            PQ  +    S      GS S    C  AW   W++    E  + + +  N+ ++  +L  
Sbjct: 792  PQSAFSNLTSITHIAVGSNSLYCDCNMAWFSKWIKSKFIEAGIARCEYPNTVSNQLLLTA 851

Query: 204  CNGKFLSNFTVKTR 245
               +F  +  V T+
Sbjct: 852  QPYQFTCDSKVPTK 865


>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
            protein F40E10.4 protein.
          Length = 1410

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/74 (21%), Positives = 29/74 (39%)
 Frame = +3

Query: 24   PQXTYILSVSAARPVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYV 203
            PQ  +    S      GS S    C  AW   W++    E  + + +  N+ ++  +L  
Sbjct: 792  PQSAFSNLTSITHIAVGSNSLYCDCNMAWFSKWIKSKFIEAGIARCEYPNTVSNQLLLTA 851

Query: 204  CNGKFLSNFTVKTR 245
               +F  +  V T+
Sbjct: 852  QPYQFTCDSKVPTK 865


>AC024747-3|AAK85498.2|  318|Caenorhabditis elegans Hypothetical
           protein Y110A2AM.1 protein.
          Length = 318

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 201 VCNGKFLSNFTVKTRRNVDNMSIK 272
           VC   F ++F +K R+N++N+S K
Sbjct: 264 VCEFFFFAHFLLKMRKNLENLSQK 287


>Z81533-4|CAB04338.1|  280|Caenorhabditis elegans Hypothetical
           protein F36G9.7 protein.
          Length = 280

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 282 VFHVLLTYYQHFDEF*L*NYLKTFHCRHIKCRTT 181
           +++VL   +QHF  F    YL T +  ++ C T+
Sbjct: 227 IYYVLNKPFQHFSSFPYYEYLCTHYWTNLTCYTS 260


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,020,765
Number of Sequences: 27780
Number of extensions: 146726
Number of successful extensions: 408
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)