Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_J19
         (339 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   5.4  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         20   7.1  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    20   7.1  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    20   7.1  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    20   7.1  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    20   7.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   9.4  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 2   LSHPSDRPTXNIHFICVSSTTCGG 73
           L HP+ +    +H    SS+  GG
Sbjct: 400 LHHPNCKINRKVHHTTSSSSAAGG 423


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +3

Query: 6   PILRIAPQXTYILSVSAARPVAGSTSAITSCTEAWSL 116
           P+L+  P  ++      +  V+ S  AI  C   W L
Sbjct: 102 PLLQPYPDWSFAKYDDCSGIVSASKLAIDKCDRLWVL 138


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -1

Query: 282 VFHVLLTYYQHFDEF 238
           V H L  YY H  E+
Sbjct: 264 VLHALQLYYPHVPEY 278


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -1

Query: 282 VFHVLLTYYQHFDEF 238
           V H L  YY H  E+
Sbjct: 279 VLHALQLYYPHVPEY 293


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +3

Query: 6   PILRIAPQXTYILSVSAARPVAGSTSAITSCTEAWSL 116
           P+L+  P  ++      +  V+ S  AI  C   W L
Sbjct: 102 PLLQPYPDWSFAKYDDCSGIVSASKLAIDKCDRLWVL 138


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +3

Query: 6   PILRIAPQXTYILSVSAARPVAGSTSAITSCTEAWSL 116
           P+L+  P  ++      +  V+ S  AI  C   W L
Sbjct: 102 PLLQPYPDWSFAKYDDCSGIVSASKLAIDKCDRLWVL 138


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 196 KMQNDAGEFVDLYC 155
           K+  +AGEF +L C
Sbjct: 592 KLPMNAGEFANLQC 605


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,585
Number of Sequences: 438
Number of extensions: 1653
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)