Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_J17
         (539 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0292 - 2117212-2117326,2117402-2117527,2117654-2117791,211...    28   5.5  
01_01_0543 + 3985771-3985866,3985965-3986145,3986668-3986780,398...    27   9.6  

>07_01_0292 -
           2117212-2117326,2117402-2117527,2117654-2117791,
           2117904-2118323,2118421-2118591,2118701-2118880,
           2118988-2119140,2119226-2119384,2119841-2120152,
           2120285-2120452,2120851-2121050,2122207-2122589,
           2123244-2123625
          Length = 968

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 374 FD*VLKHQKPLKYCISNKDW 315
           F  ++++Q+ L +CI NKDW
Sbjct: 426 FQCLVRYQRSLNHCILNKDW 445


>01_01_0543 +
           3985771-3985866,3985965-3986145,3986668-3986780,
           3986854-3987190,3987602-3987603,3987661-3987743,
           3988017-3988116,3988330-3988463,3988711-3988788,
           3989333-3989387,3990159-3990239,3990369-3990567,
           3990609-3990699,3990770-3990892,3991440-3991528,
           3992450-3992539,3992619-3992792,3992911-3993035,
           3993246-3993372,3993826-3993998
          Length = 816

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 153 SLFLANKPSTLKTVIFKCFPSKMMLWMSRNIYEFG 257
           S  L +K + +KT  FK FP  ++L M + + E G
Sbjct: 547 STALNSKTTAIKTAGFKTFPDYLVLQMRKFVMEAG 581


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,544,178
Number of Sequences: 37544
Number of extensions: 145585
Number of successful extensions: 172
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)