Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_J13
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    36   0.005
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    29   0.62 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    28   1.1  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    28   1.1  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    28   1.4  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    27   2.5  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    27   3.3  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    26   4.4  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    25   7.7  
SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ...    25   7.7  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    25   7.7  

>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 17/67 (25%), Positives = 38/67 (56%)
 Frame = +2

Query: 5   HXKLTHYITYITRKSPVHTXXN*LVTNPIWYHWYFKRVTPVPYYLSVVIGYIYIYLFIEV 184
           H KL+HYI+ +T++SP+ +     + + +        VT +   +S  +GY Y+Y+ +  
Sbjct: 679 HDKLSHYISVVTQQSPIESRFTDRLVDNLNAEVSLGTVTNIDEAVS-WLGYTYLYIRMRR 737

Query: 185 DDVIFGL 205
           + +++G+
Sbjct: 738 NPLVYGI 744


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
 Frame = -3

Query: 367  FRGLLSN----LNL--PLVD-NFRQLQPLFGRRVFVRITSKNPKFKKTKLHYSKW 224
            F GLLS+    L+L   L+D   +Q  P   RR+F R+ + N   KK K  + KW
Sbjct: 1605 FEGLLSSYPKRLDLWNVLIDMEMKQDDPSIVRRLFQRLLALNLSTKKAKFAFKKW 1659


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -1

Query: 321 SGSYNRCLVAVSSSESHQRTLSSRRPNSTTPNGTGLDTRSPKMTSSTS 178
           S S  +   +V+SS     + SS +P S+TP  +     SP+ T STS
Sbjct: 453 STSVKQPTASVASSSVSVPSSSSVQPQSSTPISSSSSASSPQSTLSTS 500


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
 Frame = -1

Query: 309 NRCLVAVS--SSESHQRTLSSRRPNSTTPNGTGLDTRSPKM 193
           +RC  A+S  SSESH +  ++++P S TPN T +  +S ++
Sbjct: 541 HRCEAAISSHSSESHSKR-TTQQPKS-TPNHTNIKVKSERL 579


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
 Frame = -1

Query: 309 NRCLVAVSSSESHQRTLSSRRP------NSTTPNGTGLDTRSPKMTSSTSMNKYIY 160
           NR    +S S    +TL    P      +   P  +G+D+ S K+ +S++ N+YI+
Sbjct: 401 NRLKSLLSISSHLPKTLQLMEPLLDGILSQLVPKSSGIDSNSQKLLTSSTSNEYIH 456


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +2

Query: 44  KSPVHTXXN*LVTNPIWYHWYFKRVTPVPYYLSVVIGYIYIYLFIEVDDVI 196
           KS VH     L+  P+ YH + K    +  +L ++   IY  + IEV+++I
Sbjct: 627 KSNVHEIIQ-LLNEPVKYHNFLKPSEALLQHLPLIHPNIYGEVVIEVENII 676


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = -3

Query: 589 KLLSPIVKNLTAIENFNSTLQL 524
           K++SP +KNL A   FNSTLQ+
Sbjct: 204 KVISPGLKNLGATCFFNSTLQV 225


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 77  VTNPI-WYHWYFKRVTPVPYYLSVVIGYIYIYLF 175
           + +PI W   YF    P+P +LSV + +   Y+F
Sbjct: 338 IESPISWNLKYFISALPLPCFLSVQLRWFITYIF 371


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -1

Query: 291 VSSSESHQRTLSSRRPNSTTPNGTGLDTRSPKMTSS 184
           +SSS ++  T SS   +++TP  T   T++  +TS+
Sbjct: 170 ISSSSTYNSTTSSYHNSTSTPPPTITSTKASTVTST 205


>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 288 SSSESHQRTLSSRRPNSTTPNGTGLDTRSPKMTSSTSMN 172
           S+SES Q   S+R  NS TP  T   + +  +++S  ++
Sbjct: 177 STSESSQTDTSTRPANSQTPTTTRASSYTTLVSTSNQVS 215


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -1

Query: 300 LVAVSSSESHQRTLSSRRPNSTTPNGTGLDTRSPKMTSSTSMNKYIY 160
           LVA    E  Q  +S   P     + T L + +P M ++  + K+IY
Sbjct: 364 LVAQLYEEMQQIPMSEMNPLLNLSSPTSLISSNPNMLANLPLRKHIY 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,705,219
Number of Sequences: 5004
Number of extensions: 57337
Number of successful extensions: 186
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)