Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_J07
         (674 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53149-6|AAZ82856.1|  284|Caenorhabditis elegans Hypothetical pr...    95   4e-20

>U53149-6|AAZ82856.1|  284|Caenorhabditis elegans Hypothetical
           protein C24B5.4 protein.
          Length = 284

 Score = 95.1 bits (226), Expect = 4e-20
 Identities = 54/159 (33%), Positives = 77/159 (48%), Gaps = 1/159 (0%)
 Frame = -1

Query: 587 DEXRTALXGXYLLTEG-KPGKVIKVVAKNRTGKSNFITSIRETLKTHYGDKVVGLGGAFV 411
           DE + +L     L++  K   V+   A  R G+ N    IR+ L+ H+G K+V L G F+
Sbjct: 125 DEPKFSLMANLALSDADKSSTVVHFKASVRKGEKNLTNCIRDGLQEHFGKKIVSLAGQFI 184

Query: 410 LRAGRGYFHVMPDFSRAPLCSDAAVDSWLHYFELDAPXXXXXXXXXXXXXXXLRVQXXXX 231
           ++ G+   HVMPDF   P  ++A VD WL+YFE+ AP               LR++    
Sbjct: 185 IQTGKARLHVMPDFPGCPFENNAEVDKWLNYFEMSAPLICATVMHSYDPGHNLRLE---- 240

Query: 230 XXXXXXXXXXXXXXXYDTTPEDVHYEGYFTVASSLIRVD 114
                          YD TPE V YEG+F  AS + R+D
Sbjct: 241 HTHCYSDHGDAGHYHYDVTPETVSYEGWFAPASKIYRID 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,049,652
Number of Sequences: 27780
Number of extensions: 158769
Number of successful extensions: 439
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)