Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_J06
         (793 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0193 + 1599970-1600503,1601488-1601919,1602010-1602147,160...    29   4.2  
08_02_1212 - 25325911-25327047                                         28   7.4  
04_04_1078 - 30655212-30655289,30655614-30655811,30655916-306560...    28   7.4  
04_03_0626 + 18135267-18136304                                         28   9.8  

>08_01_0193 +
           1599970-1600503,1601488-1601919,1602010-1602147,
           1602532-1602600
          Length = 390

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -3

Query: 407 LSIIYLSQQCARYGLKCRYLPDPKLSLSLEYQFEYV 300
           +++  +S++ A YGL+     DP+L + + +Q EYV
Sbjct: 139 VALACVSRKMAMYGLRKFLFVDPELGMRIRFQKEYV 174


>08_02_1212 - 25325911-25327047
          Length = 378

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 437 PFKLAF-FSVATSGRMRSFWQVLIFTKLGDFSVRYTLCSPPVPSTWKYSPQDG 592
           PF LA  F++ +       + +L+  +LGDFS+ +TL S P P        DG
Sbjct: 86  PFSLAAEFNLLSGNPGSPAFFLLLKPRLGDFSLSHTLRSSPHPGNKVGEVSDG 138


>04_04_1078 -
           30655212-30655289,30655614-30655811,30655916-30656086,
           30656172-30656252,30656464-30656565,30656671-30656779,
           30656900-30656965,30657566-30657630,30658386-30658475,
           30658952-30659123,30659831-30659943,30660046-30660219,
           30660300-30660347,30662041-30662205
          Length = 543

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 93  AFFYNSHIE*VLLLFSPQAIISFDE 167
           +FF    ++ + LLFSP ++ISFDE
Sbjct: 464 SFFLAETLKYLYLLFSPPSVISFDE 488


>04_03_0626 + 18135267-18136304
          Length = 345

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 570 HVLGTGGEQSV*RTEKSPSLVKIKTCQ 490
           H++G GG+ +V R E   ++V IK C+
Sbjct: 28  HIVGEGGQGTVYRAEIDGTIVAIKRCK 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,277,889
Number of Sequences: 37544
Number of extensions: 381957
Number of successful extensions: 714
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)