Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_J06
         (793 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41625-3|AAA83326.1|  264|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U80446-1|AAB37802.2| 1198|Caenorhabditis elegans Spindle defecti...    29   5.0  
U41276-4|AAA82468.1|  272|Caenorhabditis elegans Temporarily ass...    28   6.7  

>U41625-3|AAA83326.1|  264|Caenorhabditis elegans Hypothetical
           protein K03A1.4a protein.
          Length = 264

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = -1

Query: 787 ATSRRIHVPAAYKNMGNATARTSRIFVTLFKLQFLHIFLNLIIHAVEFFFVLFRFILS 614
           A  R  H      N+ N+  R+ R F+TLFKL  +      + ++   F + FRF  S
Sbjct: 46  ANLRNPHNYLKKTNLSNSDLRSRRHFLTLFKLLEMDSLKAAVDYSKTLFSLFFRFCAS 103


>U80446-1|AAB37802.2| 1198|Caenorhabditis elegans Spindle defective
           protein 5 protein.
          Length = 1198

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 620 DKPEQNKKKFDRMNNKVEENMKELQLK*SHKNTTSSGS 733
           D   +  K+F+   + +EE +KEL+L  +  N T+ GS
Sbjct: 144 DNFARQMKEFEAQKHAMEERIKELELSATDANNTTVGS 181


>U41276-4|AAA82468.1|  272|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 303 protein.
          Length = 272

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -3

Query: 608 LKTNGFHLAESTSMCWVL--VANKVYSVRRSHLV 513
           +KTNGFH   S+S  WV   V  KV+   RS L+
Sbjct: 69  VKTNGFHYGSSSS-SWVRLNVGGKVFQTTRSTLM 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,386,377
Number of Sequences: 27780
Number of extensions: 368714
Number of successful extensions: 893
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)