Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_J06
(793 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex det... 24 1.4
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 24 1.9
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 23 2.5
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 23 2.5
DQ244075-1|ABB36785.1| 548|Apis mellifera cytochrome P450 monoo... 23 4.3
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 22 5.7
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 22 5.7
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 22 7.5
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 22 7.5
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 22 7.5
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 22 7.5
AY855337-1|AAW47987.1| 510|Apis mellifera tyrosine hydroxylase ... 22 7.5
>DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 24.2 bits (50), Expect = 1.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 277 KLNYNNRCTYSN*YSNDKLSF 339
K NYNN+ Y+N N KL +
Sbjct: 97 KYNYNNKYNYNNNNYNKKLYY 117
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 23.8 bits (49), Expect = 1.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 259 SRYSLEKLNYNNRCTYSN*YSND 327
S Y+ NYNN Y+N Y+N+
Sbjct: 325 SNYNNYNNNYNNYNNYNNNYNNN 347
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 23.4 bits (48), Expect = 2.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 205 DRG*NLSYIALRYLPINESRYSL 273
D G + Y ++Y PINE ++L
Sbjct: 1524 DNGCPILYFTIQYRPINEFHWTL 1546
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 23.4 bits (48), Expect = 2.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 205 DRG*NLSYIALRYLPINESRYSL 273
D G + Y ++Y PINE ++L
Sbjct: 1520 DNGCPILYFTIQYRPINEFHWTL 1542
>DQ244075-1|ABB36785.1| 548|Apis mellifera cytochrome P450
monooxygenase protein.
Length = 548
Score = 22.6 bits (46), Expect = 4.3
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -1
Query: 679 IFLNLIIHAVEFFFVLFR 626
+FL+L+I A+ +F+ FR
Sbjct: 14 VFLSLLIPALILYFIYFR 31
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 22.2 bits (45), Expect = 5.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 572 SMCWVLVANKVYSVRRSHLVW*KLKPARMT 483
S+C L+ +VY+V SH + L PA ++
Sbjct: 86 SVCKSLIERQVYAVVVSHPLTGDLSPAAVS 115
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 22.2 bits (45), Expect = 5.7
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +2
Query: 242 TYPLMNPDTH 271
TYP +NPD H
Sbjct: 1473 TYPRINPDNH 1482
Score = 21.8 bits (44), Expect = 7.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -2
Query: 525 KSPSLVKIKTCQNDRIRPDVATLKNANLKGQCFKRVLY 412
+SP LV + T + D +V +KN + C +R+ Y
Sbjct: 194 RSPELVPMPTLKGDGRHMEVIKIKNFD---NCDQRINY 228
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 21.8 bits (44), Expect = 7.5
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = +1
Query: 253 NESRYSLEKLNYNNRC 300
N +Y+ NYNN C
Sbjct: 94 NNYKYNYNNNNYNNNC 109
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.8 bits (44), Expect = 7.5
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = +1
Query: 253 NESRYSLEKLNYNNRC 300
N +Y+ NYNN C
Sbjct: 94 NNYKYNYNNNNYNNNC 109
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.8 bits (44), Expect = 7.5
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = +1
Query: 253 NESRYSLEKLNYNNRC 300
N +Y+ NYNN C
Sbjct: 94 NNYKYNYNNNNYNNNC 109
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.8 bits (44), Expect = 7.5
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = +1
Query: 253 NESRYSLEKLNYNNRC 300
N +Y+ NYNN C
Sbjct: 94 NNYKYNYNNNNYNNNC 109
>AY855337-1|AAW47987.1| 510|Apis mellifera tyrosine hydroxylase
protein.
Length = 510
Score = 21.8 bits (44), Expect = 7.5
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -3
Query: 785 HFPQDPRSCSVQEYGERNCPN*SYFCDS 702
H P +P+S +VQ+Y +++ + DS
Sbjct: 418 HRPFEPKSTAVQKYQDQDYQPIYFVADS 445
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,820
Number of Sequences: 438
Number of extensions: 4547
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -