Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_J02
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    27   4.2  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    26   5.6  
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   7.4  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    25   9.7  

>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 491 WLSLFLYYKNGDCKYCHFFPSL 426
           WLSL+L  +NG C   H  P+L
Sbjct: 184 WLSLYLSIRNGICYLWHRNPTL 205


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 727 LWKRTVDDRSGSR*YG*TLLRWRVVRW 807
           +WK  V+DRSG +  G T   W++  W
Sbjct: 558 VWKLLVNDRSGGKHEG-TFENWQLALW 583


>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 128

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = -3

Query: 508 KNYNNSGFHCFYTIKMGTVN---TVIFFHPSV 422
           KNYN   F C+  + +G +    TVI ++ S+
Sbjct: 54  KNYNGFSFFCWVFLNLGVIGIIITVIIYYISI 85


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 398 KGDGEVLEEIVSKERHKEINRQA 330
           K   EV+ EI++K +H +  RQA
Sbjct: 203 KSKREVMSEIIAKSKHYKAERQA 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,493,690
Number of Sequences: 5004
Number of extensions: 74459
Number of successful extensions: 194
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)