Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_J02
         (816 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1091 + 24256025-24256190,24256806-24257978,24258066-242587...    29   3.3  
02_02_0379 + 9565001-9565515,9565553-9565833,9565884-9566084,956...    29   5.8  
01_06_0061 - 26071984-26072343,26072792-26073139,26073228-260733...    28   7.7  

>08_02_1091 +
           24256025-24256190,24256806-24257978,24258066-24258733,
           24258994-24260065,24260241-24260563,24260647-24260835,
           24261400-24261506,24262103-24262163,24262617-24262634
          Length = 1258

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -3

Query: 796 PATGVEFIHTTWSHCGHPQCVSRGLFCHVPSGYGMSSPPRSFPS-AMTCPSSNEAC 632
           P   V+++        H   VS G     P  +  S+PP +FPS A +   S +AC
Sbjct: 677 PGADVKYVAVDDQILNHTDYVSSGCEVLNPENHPSSTPPSTFPSYASSDQQSQQAC 732


>02_02_0379 +
           9565001-9565515,9565553-9565833,9565884-9566084,
           9566253-9566309,9566955-9567019,9567199-9567420
          Length = 446

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 672 KDRGGELIP*PDGTWQKRPLETH 740
           +D  GEL+P PD +W+ RPL+ H
Sbjct: 374 EDLPGELLPMPDPSWE-RPLKPH 395


>01_06_0061 -
           26071984-26072343,26072792-26073139,26073228-26073371,
           26073454-26073723,26075019-26075825
          Length = 642

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +1

Query: 580 LAMLGAEPSCCLQFNTLHKPRLKKDMS 660
           LA LGA  S   QF++L K  LK+DMS
Sbjct: 572 LAWLGAASSLDKQFSSLAKEDLKRDMS 598


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,703,417
Number of Sequences: 37544
Number of extensions: 492527
Number of successful extensions: 1056
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)