Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_J02
         (816 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50308-5|AAG24033.2|  284|Caenorhabditis elegans Seven tm recept...    31   0.75 
AF025452-7|AAB70941.2|  335|Caenorhabditis elegans Serpentine re...    29   3.0  
AF039038-5|AAK29711.1|  604|Caenorhabditis elegans Cell division...    29   5.3  
Z92811-3|CAB07274.1| 1083|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z92789-9|CAB07223.1| 1083|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical pr...    28   9.2  
U41545-7|AAK39136.1|  687|Caenorhabditis elegans Hypothetical pr...    28   9.2  
AF000298-6|AAC48262.1|  340|Caenorhabditis elegans Seven tm rece...    28   9.2  

>U50308-5|AAG24033.2|  284|Caenorhabditis elegans Seven tm receptor
           protein 94 protein.
          Length = 284

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -3

Query: 256 LRVSFLILSI*YLGFFAAFIRNCLVMKMIGTK 161
           +R+ F  +S  YLGFF AFI N  ++ +I T+
Sbjct: 1   MRIPFYTVSAEYLGFFVAFITNVTLIYLIITR 32


>AF025452-7|AAB70941.2|  335|Caenorhabditis elegans Serpentine
           receptor, class i protein28 protein.
          Length = 335

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 120 VLWLCFNNKVE*LMFLYSTLKHSKYLLK*RQYCFC 16
           VL +CF  K E +M L ST+K + Y +    Y FC
Sbjct: 111 VLTICFLRKHEAIMNLKSTVKSNNYWIYILTYIFC 145


>AF039038-5|AAK29711.1|  604|Caenorhabditis elegans Cell division
           cycle related protein25.1 protein.
          Length = 604

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -2

Query: 704 RLWNEL--PSTVFPERYDMSFFKRGLWRVLNCRQ 609
           R+ NEL  P   +PE Y + +  + LW    CRQ
Sbjct: 379 RVLNELRYPHVEYPEMYLLDYGYKSLWSTAECRQ 412


>Z92811-3|CAB07274.1| 1083|Caenorhabditis elegans Hypothetical
           protein T01G1.3 protein.
          Length = 1083

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 525 GRRAYGPPDGEWLPSPMDFSNARGRAKLLP 614
           G   Y P   +  P PMD+SN R  + L P
Sbjct: 810 GFNPYNPSHSQCPPPPMDYSNNRRNSNLTP 839


>Z92789-9|CAB07223.1| 1083|Caenorhabditis elegans Hypothetical
           protein T01G1.3 protein.
          Length = 1083

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 525 GRRAYGPPDGEWLPSPMDFSNARGRAKLLP 614
           G   Y P   +  P PMD+SN R  + L P
Sbjct: 810 GFNPYNPSHSQCPPPPMDYSNNRRNSNLTP 839


>U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical
           protein F02E8.5 protein.
          Length = 578

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 763 WSHCGHPQCVSRGLFCH 713
           WS C HP CV+  +F H
Sbjct: 12  WSRCVHPSCVAWVIFIH 28


>U41545-7|AAK39136.1|  687|Caenorhabditis elegans Hypothetical
           protein C02F12.8 protein.
          Length = 687

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 748 HPQCVSRGLFCHVPSGYGMSSPPRSFPSAMT 656
           HPQ V++ +  HVP G    +PP+  P+  T
Sbjct: 162 HPQIVNQPMHPHVPVGSQNYNPPQFVPAPPT 192


>AF000298-6|AAC48262.1|  340|Caenorhabditis elegans Seven tm
           receptor protein 122 protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 405 PENRHTTEGWKKMTVFTVPIFI 470
           P + H  EGWK   ++ +PI I
Sbjct: 119 PHDLHHLEGWKMWKIYVIPIII 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,419,570
Number of Sequences: 27780
Number of extensions: 423340
Number of successful extensions: 1000
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)