Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_J02
         (816 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.4  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              23   4.5  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              23   4.5  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   4.5  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   5.9  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 543 PPDGEWLPSPMDFSNARG 596
           PPD  W P  + F+NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +2

Query: 491 TIIIIFFYCLC 523
           TI++IF +C+C
Sbjct: 3   TIVVIFAFCIC 13


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +2

Query: 491 TIIIIFFYCLC 523
           TI++IF +C+C
Sbjct: 3   TIVVIFAFCIC 13


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 473 IKTMKATIIIIFFYCLC 523
           I+T+K T+III  + +C
Sbjct: 256 IRTLKMTVIIIAVFFIC 272


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +2

Query: 68  E*RNISHSTLLLKHNHKTISYPXGTNLKIY 157
           E RN+   T+++ +N +T+S     + ++Y
Sbjct: 406 ELRNLGRKTIMVNYNPETVSTDYDMSDRLY 435


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,373
Number of Sequences: 438
Number of extensions: 5028
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)