Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_J01
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    29   0.73 
SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha...    25   9.0  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    25   9.0  

>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -2

Query: 115 ISIVGKNLILSKWKV---NPLCYYLTTFDSFCYKIL 17
           +S + KN +L   K+    P+C+ +T + SF Y IL
Sbjct: 348 LSDIAKNYLLVPMKLLFTEPICFLITLYSSFVYAIL 383


>SPBC1711.04 |||methylenetetrahydrofolate reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 320

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 299 NVYSVSASSQPEATPRSLAPCTFINVINV 213
           N+Y       PE T +S+ PCT + ++ +
Sbjct: 132 NMYHNIRHLDPEKTKKSILPCTPLAIVKI 160


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -2

Query: 154 NCICVNDLIKYYYISIVGKNLILSKWKV--NPLCYYLTTFDSFCYKILQKTS 5
           N  C   L++YY I +  K  +L+ W++  NP+       D   +K+L+K +
Sbjct: 544 NRFCFKQLLEYYDIYL--KFKLLADWRLLTNPVLQIQEISDYCHFKLLKKVN 593


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,027,222
Number of Sequences: 5004
Number of extensions: 38010
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)