Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_I23
         (330 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo...    29   0.24 
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    25   2.2  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    25   3.0  
SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        25   3.9  
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    25   3.9  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    25   3.9  
SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos...    23   9.0  
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...    23   9.0  

>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 28.7 bits (61), Expect = 0.24
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 208 PNWEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNV 101
           P W E+EK ++ LY+ + I   Y   +    G F++
Sbjct: 33  PTWVEWEKKSKRLYVANEIEEGYVAVFEWDNGKFSL 68


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -3

Query: 193 FEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKK 80
           F   +E++ L   I   Y + Y HS   FNV IT N K
Sbjct: 226 FGLPSEVMPLFPQIEAVYEM-YPHSLPGFNVNITTNSK 262


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 175 FPRLSQTLPNLEQKSLRPIIDYSLEMFL 258
           FP L Q LPN E  +L  + +  LE+FL
Sbjct: 162 FPDLVQVLPNPEINNLVILRNLKLEVFL 189


>SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 141

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 29  YLIFLTS*LYFCFVLKALFIVSNFDI 106
           + IF TS L+ C++     ++SNF I
Sbjct: 107 FQIFCTSILFTCYIQSFSLLISNFFI 132


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 136 VKYSHSKGAFNVKITDNKKCLQYK 65
           +KY+ S  +FN+ I DN K +  K
Sbjct: 9   IKYAQSGDSFNILIKDNAKKITEK 32


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +1

Query: 148 YLLDPVDIT----FPRLSQTLPNLEQKSLRPIIDYSLEMFLKIVPEYV 279
           YL D  D T    FP LS  L +L ++S    +  SL+ FLK + E +
Sbjct: 338 YLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAI 385


>SPBC947.13 |rba50||RNA polymerase II associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 175 FPRLSQTLPNLEQKSL 222
           FP +S+TLP  E KS+
Sbjct: 37  FPAVSRTLPKRESKSM 52


>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 148 YLLDPVDITFPRLSQTLPNLEQK 216
           YL++PV +T   + Q +  +EQ+
Sbjct: 470 YLIEPVMLTIGNIGQAVDRVEQR 492


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,351,497
Number of Sequences: 5004
Number of extensions: 26286
Number of successful extensions: 66
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)