Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_I23
(330 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1044 - 8208126-8208230,8208468-8208536,8208640-8208711 45 2e-05
02_03_0412 - 18749430-18749587,18749696-18749857,18750062-187501... 27 2.7
02_03_0199 + 16263549-16263644,16264941-16265899,16267140-162677... 27 2.7
12_02_1084 - 25928373-25928426,25928551-25928652,25928913-259290... 27 4.7
01_01_0429 + 3254291-3254435,3254902-3255210,3255286-3256747,325... 26 6.2
01_01_0424 + 3200223-3200634,3200677-3200836,3200987-3201342,320... 26 6.2
03_05_0044 + 20203644-20204054,20204695-20204916,20205092-202051... 26 8.3
01_06_0840 + 32343700-32344138,32345329-32345419,32345584-323458... 26 8.3
>06_01_1044 - 8208126-8208230,8208468-8208536,8208640-8208711
Length = 81
Score = 44.8 bits (101), Expect = 2e-05
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = -3
Query: 220 MTFVPNWEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTE-VQSRC 44
M + +W+EF + L+ P TRY VKY H +G +K+TDN + + + + V S C
Sbjct: 1 MVYFDSWDEFVSKSVELFRNHPDTTRYVVKYRHCEGKLVLKVTDNHENIHWLCDLVISMC 60
>02_03_0412 -
18749430-18749587,18749696-18749857,18750062-18750194,
18751640-18751744,18751818-18751935,18752232-18752320,
18752407-18753660,18753785-18753831,18754285-18754339,
18754783-18754884
Length = 740
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 121 NVNI*HCTEYLLDPVDITFPRLSQTLPNLEQKSLRPIIDYSLEMFLK 261
+VN + + DP+ PR +T P Q+ +RP Y+ ++FL+
Sbjct: 147 SVNANYLLNFHYDPISRPQPRGPRTYPTRRQRKIRP---YNKDLFLQ 190
>02_03_0199 + 16263549-16263644,16264941-16265899,16267140-16267791,
16267895-16267981,16268253-16268381,16269990-16270036,
16271337-16271438,16272720-16272843,16272981-16273028,
16273934-16274026,16274325-16274408,16274536-16274619,
16274751-16274819,16275531-16275590,16275946-16276017,
16276957-16277064,16278162-16278238,16278391-16278474,
16278617-16278728,16278778-16278810,16278811-16278900,
16279012-16279077,16279163-16279258,16279446-16279497,
16279723-16279775,16279998-16280018
Length = 1165
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +1
Query: 157 DPVDITF-PRLSQTLPNLEQKSLRPIIDYSLEMFLKIVP 270
D + TF PRL LP+ ++K++ I+ L++FLK P
Sbjct: 1009 DEIQSTFTPRLLGVLPDSDEKNVYDILLLVLQVFLKQGP 1047
>12_02_1084 -
25928373-25928426,25928551-25928652,25928913-25929039,
25929292-25930730,25931430-25931447
Length = 579
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -3
Query: 223 VMTFVPNWEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFN 104
+ T NW+E K +++ L+D ++T YSV + G F+
Sbjct: 42 ISTLNKNWKE--KISKIAALRDELSTIYSVVSASESGVFS 79
>01_01_0429 +
3254291-3254435,3254902-3255210,3255286-3256747,
3256950-3257577
Length = 847
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 163 VDITFPRLSQTLPNLEQKSLRPIIDYSLEMFLKIVPEY 276
+D++F RL ++P S +DYS F IVP +
Sbjct: 214 LDLSFNRLQGSIPIPVTTSSEIALDYSNNHFSSIVPNF 251
>01_01_0424 +
3200223-3200634,3200677-3200836,3200987-3201342,
3201958-3203252
Length = 740
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +1
Query: 148 YLLDPVDITFPRLSQTLPNLEQKSLRPIIDYSLEMFLKIVPEY 276
YL++P + P L+ + NL +ID +PEY
Sbjct: 170 YLINPWQMDLPNLTALVANLSSLRSLNVIDLQYNYLTGPIPEY 212
>03_05_0044 +
20203644-20204054,20204695-20204916,20205092-20205130,
20206275-20206396,20206489-20206639,20207892-20207963,
20208256-20208351,20208861-20208949,20209068-20209134,
20210197-20210235,20210369-20210429,20210572-20210681,
20210766-20210840,20210914-20210982,20213126-20213247,
20214682-20214807,20214897-20215017,20215133-20215233,
20215564-20215624,20216560-20216613,20217585-20217689
Length = 770
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 314 VRRAYIAYCSVPTYSGTIFKN 252
+RRA +A +P Y G+ FKN
Sbjct: 318 IRRATVARKFIPVYMGSAFKN 338
>01_06_0840 +
32343700-32344138,32345329-32345419,32345584-32345866,
32346023-32346097,32346470-32346514,32346889-32346979,
32347060-32347118,32347621-32347704,32348109-32348168,
32348585-32348637,32348724-32348757,32349334-32350335,
32350477-32351035,32351873-32352372,32352793-32353200
Length = 1260
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 259 LKTFLVNSQ*LAVMTFVPNWEEFEKAAEML 170
L+ V+S A++ F+P WE+ + E L
Sbjct: 608 LRKICVDSNEGAILVFLPGWEDINQTRERL 637
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,479,232
Number of Sequences: 37544
Number of extensions: 132316
Number of successful extensions: 272
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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