Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_I23
(330 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z22177-3|CAA80148.1| 76|Caenorhabditis elegans Hypothetical pr... 60 3e-10
AF101304-2|AAN60536.1| 1123|Caenorhabditis elegans Hypothetical ... 29 0.60
AF101304-1|AAC69200.2| 1121|Caenorhabditis elegans Hypothetical ... 29 0.60
Z80215-7|CAB02274.1| 674|Caenorhabditis elegans Hypothetical pr... 29 1.0
AC006629-10|ABC48257.1| 312|Caenorhabditis elegans Hypothetical... 29 1.0
AC087081-6|AAG37976.1| 301|Caenorhabditis elegans Hypothetical ... 28 1.8
U29382-1|AAG00006.1| 382|Caenorhabditis elegans Hypothetical pr... 27 3.2
AF022975-10|AAB70668.2| 661|Caenorhabditis elegans Hypothetical... 27 3.2
AF000298-1|AAC48257.2| 229|Caenorhabditis elegans Pcna (prolife... 27 3.2
Z81496-11|CAB04069.2| 448|Caenorhabditis elegans Hypothetical p... 26 5.5
Z70312-2|CAA94386.2| 396|Caenorhabditis elegans Hypothetical pr... 26 5.5
AY204204-1|AAO39205.1| 448|Caenorhabditis elegans nuclear recep... 26 5.5
Z50027-7|CAA90332.3| 460|Caenorhabditis elegans Hypothetical pr... 26 7.3
Z50027-6|CAO82026.1| 564|Caenorhabditis elegans Hypothetical pr... 26 7.3
U80955-5|AAG01559.2| 573|Caenorhabditis elegans Ferm domain (pr... 26 7.3
U80955-4|ABB51180.1| 589|Caenorhabditis elegans Ferm domain (pr... 26 7.3
Z77663-10|CAB01204.1| 543|Caenorhabditis elegans Hypothetical p... 25 9.7
AF025461-3|AAB70998.3| 632|Caenorhabditis elegans Hypothetical ... 25 9.7
AF025461-2|ABC71819.1| 670|Caenorhabditis elegans Hypothetical ... 25 9.7
>Z22177-3|CAA80148.1| 76|Caenorhabditis elegans Hypothetical
protein ZK512.4 protein.
Length = 76
Score = 60.5 bits (140), Expect = 3e-10
Identities = 25/53 (47%), Positives = 36/53 (67%)
Frame = -3
Query: 220 MTFVPNWEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKT 62
MT+ +W+EF KAAE L+ +P R+ KY+H+KG +K+TD+ CLQY T
Sbjct: 1 MTYFTSWDEFAKAAERLHSANPEKCRFVTKYNHTKGQLVLKLTDDVVCLQYST 53
>AF101304-2|AAN60536.1| 1123|Caenorhabditis elegans Hypothetical
protein C02E11.1b protein.
Length = 1123
Score = 29.5 bits (63), Expect = 0.60
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = -3
Query: 250 FLVNSQ*LAVMTFVPNWEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQ 71
F ++ L V T + F A LY I+ ++K S+G+ NV T N KC
Sbjct: 191 FKISGYQLEVHTRTESMNPFVDAVMTLYATSSIDLP-NIKCVGSEGSLNVPSTHNVKCSI 249
Query: 70 YKTEVQSR 47
KT+ + R
Sbjct: 250 GKTDPRGR 257
>AF101304-1|AAC69200.2| 1121|Caenorhabditis elegans Hypothetical
protein C02E11.1a protein.
Length = 1121
Score = 29.5 bits (63), Expect = 0.60
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = -3
Query: 250 FLVNSQ*LAVMTFVPNWEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQ 71
F ++ L V T + F A LY I+ ++K S+G+ NV T N KC
Sbjct: 189 FKISGYQLEVHTRTESMNPFVDAVMTLYATSSIDLP-NIKCVGSEGSLNVPSTHNVKCSI 247
Query: 70 YKTEVQSR 47
KT+ + R
Sbjct: 248 GKTDPRGR 255
>Z80215-7|CAB02274.1| 674|Caenorhabditis elegans Hypothetical
protein C36B1.9 protein.
Length = 674
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -3
Query: 211 VPNWEEFEKAAEMLYLQDPINTRYSVKYSHSKGAFN 104
+P +E FE+ + + D +N Y H K FN
Sbjct: 151 IPKYENFERLGTEIPIADLVNLTMGELYEHLKAVFN 186
>AC006629-10|ABC48257.1| 312|Caenorhabditis elegans Hypothetical
protein F12E12.8 protein.
Length = 312
Score = 28.7 bits (61), Expect = 1.0
Identities = 10/34 (29%), Positives = 24/34 (70%)
Frame = +1
Query: 163 VDITFPRLSQTLPNLEQKSLRPIIDYSLEMFLKI 264
++IT+ + +T+ NLE S+R +I++ + +F ++
Sbjct: 86 IEITYENVKRTIRNLEGYSVRSVIEHFMAIFDRV 119
>AC087081-6|AAG37976.1| 301|Caenorhabditis elegans Hypothetical
protein Y82E9BL.11 protein.
Length = 301
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = -3
Query: 190 EKAAEMLYLQDPIN-TRYSVKYSHSKGAFNVK 98
E+A ++L + DP + +RY ++YS+ +G F +K
Sbjct: 252 EEADDILKIFDPDSPSRYEIEYSNDQGKFAIK 283
>U29382-1|AAG00006.1| 382|Caenorhabditis elegans Hypothetical
protein R03H10.2 protein.
Length = 382
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 2 YVLINLT*IYLIFLTS*LYFCF 67
Y+L L + IFL S LYFCF
Sbjct: 120 YLLSELGVFFFIFLASFLYFCF 141
>AF022975-10|AAB70668.2| 661|Caenorhabditis elegans Hypothetical
protein K09C6.1 protein.
Length = 661
Score = 27.1 bits (57), Expect = 3.2
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -3
Query: 130 YSHSKGAFNVKITDNKKCLQYKTEVQ 53
+S ++ FN+KITD +C+ K E++
Sbjct: 179 FSVNQHPFNIKITDYSRCMTRKPEMK 204
>AF000298-1|AAC48257.2| 229|Caenorhabditis elegans Pcna
(proliferating cell nuclearantigen) homolog protein 1
protein.
Length = 229
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -3
Query: 226 AVMTFVPNWE-EFEKAAEMLYLQDPINTRYSVKY 128
+V+T+ P+ + E A L ++DP+N +S+KY
Sbjct: 145 SVVTYSPSSNTDDETEAVTLEVKDPVNVNFSIKY 178
>Z81496-11|CAB04069.2| 448|Caenorhabditis elegans Hypothetical
protein F09C6.9 protein.
Length = 448
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +1
Query: 109 MHLLNVNI*HCTEYLLDPVDITFPRLSQTLPNLEQKSLRPIIDYSLE 249
+HL +++ +E L +P +FP +Q + S+ P+I Y ++
Sbjct: 301 LHLSYISVARKSEVLTNPDGTSFPSRTQAHYTSKTMSVAPLIRYQIQ 347
>Z70312-2|CAA94386.2| 396|Caenorhabditis elegans Hypothetical
protein ZC168.3 protein.
Length = 396
Score = 26.2 bits (55), Expect = 5.5
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +1
Query: 4 CLNKFDINLSHFP 42
CLN++ INLSH P
Sbjct: 145 CLNQYHINLSHLP 157
>AY204204-1|AAO39205.1| 448|Caenorhabditis elegans nuclear receptor
NHR-116 protein.
Length = 448
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +1
Query: 109 MHLLNVNI*HCTEYLLDPVDITFPRLSQTLPNLEQKSLRPIIDYSLE 249
+HL +++ +E L +P +FP +Q + S+ P+I Y ++
Sbjct: 301 LHLSYISVARKSEVLTNPDGTSFPSRTQAHYTSKTMSVAPLIRYQIQ 347
>Z50027-7|CAA90332.3| 460|Caenorhabditis elegans Hypothetical
protein C39B10.2a protein.
Length = 460
Score = 25.8 bits (54), Expect = 7.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 227 GRNDFCSKLGRV*ESRGNVISTGSNKY 147
GR F + +G + E GN IS N+Y
Sbjct: 373 GRKSFSAMVGDIFERAGNAISPRRNRY 399
>Z50027-6|CAO82026.1| 564|Caenorhabditis elegans Hypothetical
protein C39B10.2b protein.
Length = 564
Score = 25.8 bits (54), Expect = 7.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 227 GRNDFCSKLGRV*ESRGNVISTGSNKY 147
GR F + +G + E GN IS N+Y
Sbjct: 389 GRKSFSAMVGDIFERAGNAISPRRNRY 415
>U80955-5|AAG01559.2| 573|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 2,
isoform a protein.
Length = 573
Score = 25.8 bits (54), Expect = 7.3
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = -3
Query: 211 VPNW-EEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVK--ITDNKKCLQYKTEVQS 50
V +W + +K A+ + + P R+ VK+ S+ + N+K +T + LQ K ++ S
Sbjct: 86 VQHWLDPTKKVAKQVAIGPPFTLRFRVKFFTSEPSSNLKEELTRYQFFLQIKQDISS 142
>U80955-4|ABB51180.1| 589|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 2,
isoform b protein.
Length = 589
Score = 25.8 bits (54), Expect = 7.3
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = -3
Query: 211 VPNW-EEFEKAAEMLYLQDPINTRYSVKYSHSKGAFNVK--ITDNKKCLQYKTEVQS 50
V +W + +K A+ + + P R+ VK+ S+ + N+K +T + LQ K ++ S
Sbjct: 102 VQHWLDPTKKVAKQVAIGPPFTLRFRVKFFTSEPSSNLKEELTRYQFFLQIKQDISS 158
>Z77663-10|CAB01204.1| 543|Caenorhabditis elegans Hypothetical
protein F53F4.11 protein.
Length = 543
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 211 QKSLRPIIDYSLEMFLKIVPEYVGTEQYAIYARRTHS 321
+KSL P IDY+L + + + T+Q I + HS
Sbjct: 192 EKSLFPDIDYALNLSVTYKKSAITTDQGKIKIKLPHS 228
>AF025461-3|AAB70998.3| 632|Caenorhabditis elegans Hypothetical
protein M01D1.2a protein.
Length = 632
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 117 KVHLMSKLLTIKSAFNTKQKYSQDVRKMR 31
++HLM + I +QK+ QD RK+R
Sbjct: 283 RIHLMRRDDYIGVGITWRQKFGQDFRKLR 311
>AF025461-2|ABC71819.1| 670|Caenorhabditis elegans Hypothetical
protein M01D1.2b protein.
Length = 670
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 117 KVHLMSKLLTIKSAFNTKQKYSQDVRKMR 31
++HLM + I +QK+ QD RK+R
Sbjct: 283 RIHLMRRDDYIGVGITWRQKFGQDFRKLR 311
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,273,178
Number of Sequences: 27780
Number of extensions: 144862
Number of successful extensions: 407
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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