Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_I23
         (330 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   2.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   3.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   3.9  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   3.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   5.1  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    20   8.9  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 159 SCRYNISAAFSNSSQFGTKVITANY 233
           S RY ++ AF  S  FGT  I +++
Sbjct: 323 SKRYKMAVAFMLSHPFGTPRIMSSF 347


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +3

Query: 84  LLSVILTLNAPFECEYLT 137
           LLSV L  NA F CE  T
Sbjct: 339 LLSVHLGGNAEFRCEVST 356


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +3

Query: 84  LLSVILTLNAPFECEYLT 137
           LLSV L  NA F CE  T
Sbjct: 339 LLSVHLGGNAEFRCEVST 356


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 44  TS*LYFCFVLKALFIVSNFDIKCT 115
           T  LY   +LK   I+ + D++CT
Sbjct: 8   TDELYAIKILKKDIIIQDDDVECT 31


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -3

Query: 145 RYSVKYSHSKGAFNVKITDNKKCLQYKTE 59
           R+  +Y   +  F  + TD++   +YK E
Sbjct: 154 RHHPRYKRPRTTFEPRATDSRHYDRYKEE 182


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 5/18 (27%), Positives = 12/18 (66%)
 Frame = -3

Query: 250 FLVNSQ*LAVMTFVPNWE 197
           F+   Q + ++ F+P+W+
Sbjct: 15  FIEKEQMMNILMFLPSWD 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,359
Number of Sequences: 438
Number of extensions: 1588
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)