Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_I19
         (455 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0225 - 1650665-1652743                                           34   0.047
07_03_0873 + 22194172-22195434,22195534-22195670,22197531-221976...    27   7.2  
11_01_0048 - 361999-362220,362321-362412,362499-362561,362606-36...    27   9.5  
06_02_0276 + 13678457-13678734,13679592-13679931,13680025-136802...    27   9.5  

>07_01_0225 - 1650665-1652743
          Length = 692

 Score = 34.3 bits (75), Expect = 0.047
 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +3

Query: 75  IQHPCVFF--LVGINQSFHWHFSFFAFLLVSFG 167
           + HPC+F    V + Q+ H  F FF FLLVSFG
Sbjct: 5   VLHPCIFLDLFVQVRQTSHTKF-FFLFLLVSFG 36


>07_03_0873 +
           22194172-22195434,22195534-22195670,22197531-22197639,
           22197739-22197865,22197952-22198012,22199332-22199722
          Length = 695

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 302 GRDLGQRTALHFTNRSKIGKKTFSNN*RIQ 391
           G+  GQRTA+H  +   +G+  F++  R+Q
Sbjct: 651 GKMRGQRTAMHRMSLPSVGRSGFTDGRRLQ 680


>11_01_0048 -
           361999-362220,362321-362412,362499-362561,362606-362717,
           363285-364090,368545-368806
          Length = 518

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 201 RGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERKHRD 82
           RG    LA   + +  ++ +++K   E+    L++RKHRD
Sbjct: 27  RGGTTILAGTMDTEGMMDQEEEKEDDEQPADVLEDRKHRD 66


>06_02_0276 +
           13678457-13678734,13679592-13679931,13680025-13680243,
           13680328-13680420
          Length = 309

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 339 PIGVKLEKKLLAIISVYNTKATHRRQPAGHNP 434
           P G+  E KL   +  YN  +T+   P  HNP
Sbjct: 271 PKGILKETKLSGFVPKYNDFSTNILFPTNHNP 302


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,488,126
Number of Sequences: 37544
Number of extensions: 194257
Number of successful extensions: 357
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)