Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_I10
         (416 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    25   4.7  
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    25   6.2  
SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|c...    24   8.2  

>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 291 CVFISVNLSQHDKLSIIVVINNKQIRQFQMNSAHVVVLSFNKHSTV 154
           C+F     S H  LSI+   +    + F +N + VV LSF+  + V
Sbjct: 164 CLFALGAESGHVHLSIMSHSSTPFFKSFDLNCSWVVQLSFSSWNVV 209


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -3

Query: 330 NGLGYMW*FLIVDCVFISVNLSQHDKLSIIVVINNKQIRQFQMNSAHVV 184
           NG+ Y+  F   + + +S  LSQ ++L  I   ++K ++ F + S  +V
Sbjct: 78  NGVEYIKEFHAHNAMLLSAELSQDERL-FITGADDKSLKVFDVESIDLV 125


>SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 278

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 175 TEDHNMC*IHLKLPNLFIINYYN 243
           T+ H M  +H+ L    +I+YYN
Sbjct: 150 TDTHQMIGVHMTLNGTDMIHYYN 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,654,361
Number of Sequences: 5004
Number of extensions: 30474
Number of successful extensions: 46
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)