Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_I07
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S...   200   1e-52
SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac...   199   2e-52
SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit S19...    52   7e-08
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch...    28   1.3  
SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces pom...    27   1.7  
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    27   2.3  
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    26   4.0  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    26   5.3  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   7.0  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   7.0  
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch...    25   9.3  

>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 154

 Score =  200 bits (488), Expect = 1e-52
 Identities = 93/135 (68%), Positives = 107/135 (79%)
 Frame = -1

Query: 470 LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXRGLKRKPMALVKKLRRAKK 291
           L+KKR FR F YRGV+L+QLLD+  EQL++L H        RGL       ++KLR+AK 
Sbjct: 15  LRKKRTFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKS 74

Query: 290 EAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKP 111
           EAP NEKP  VKTHLRNMII+PEMVGS+VGIYNGK FNQVEI+PEMIGHYLGEFS+TYKP
Sbjct: 75  EAPLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKP 134

Query: 110 VKHGRPGIGATHSCK 66
            KHGRPGIGATHS +
Sbjct: 135 TKHGRPGIGATHSSR 149


>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 153

 Score =  199 bits (486), Expect = 2e-52
 Identities = 93/135 (68%), Positives = 107/135 (79%)
 Frame = -1

Query: 470 LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXRGLKRKPMALVKKLRRAKK 291
           L+KKR FR F YRGV+L+QLLD+  EQL++L H        RGL       ++KLR+AK 
Sbjct: 14  LRKKRSFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKT 73

Query: 290 EAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKP 111
           EAP NEKP  VKTHLRNMII+PEMVGS+VGIYNGK FNQVEI+PEMIGHYLGEFS+TYKP
Sbjct: 74  EAPLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKP 133

Query: 110 VKHGRPGIGATHSCK 66
            KHGRPGIGATHS +
Sbjct: 134 TKHGRPGIGATHSSR 148


>SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit
           S19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 52.0 bits (119), Expect = 7e-08
 Identities = 23/49 (46%), Positives = 35/49 (71%)
 Frame = -1

Query: 260 VKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYK 114
           +KT +R+  I+P MVG+   ++NGK++  V+I  +MIGH LGEF+ T K
Sbjct: 50  IKTAVRSATILPRMVGAQFMVHNGKSYANVKITEDMIGHKLGEFAPTRK 98


>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 293 KEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYN 192
           K A P++KP +  THL +++I    VG  +  ++
Sbjct: 60  KRARPSQKPPLRSTHLPHLLIFALFVGKHIACFH 93


>SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/52 (23%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -2

Query: 532 GRCFLILLSNKQET-WLRSTKPSRKSVFSGSSLTGELISISSLICPMSNSWN 380
           G+C   + +N     ++  +  S+ +  +   +TG +++ISS +C + N +N
Sbjct: 123 GQCSKWISANVPNAEFVSVSSTSQAAALASKDITGTIVAISSELCAVENQFN 174


>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 198 NADN*TDHLGNDDHVSQVSLHDLWLLIR 281
           N  N T H+ ++  V +V++HD+W  I+
Sbjct: 18  NVPNETKHIFDEISVKEVAVHDIWKRIQ 45


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
 Frame = -1

Query: 224 EMVGSIVGIYNGK-TFNQVEIKPEMI-----GHYLGEFSV-TYKPVKHGRPGIGATHSCK 66
           E+  + VG+YNGK  F +  + P+ +      H L E ++   KP++   PG+  TH   
Sbjct: 23  EITDATVGVYNGKIVFLEKSMTPKTLEEAKSHHLLKEATIHKLKPLQFMFPGLIDTH--- 79

Query: 65  VHSAQ 51
           +H+ Q
Sbjct: 80  IHAPQ 84


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
            Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 566  VLNTYWPSFYTRAAFXAEVTLPYRP 640
            V NTYW S+ +     A+  +PY P
Sbjct: 1145 VRNTYWTSYNSAYVQSADAMVPYYP 1169


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 194 NGKTFNQVEIKPEMIGHYLGEFSVTYKPV 108
           N +TF+  E   E     + +F VT KP+
Sbjct: 829 NSETFDDFEFSVEQFNSLINQFVVTGKPI 857


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
 Frame = -2

Query: 505 NKQET-WLRST-KPSRKSVFSGSSLTGEL 425
           NKQET  L++T +P+ K +  GSS TG++
Sbjct: 39  NKQETAGLQTTSRPTAKQLVGGSSWTGKI 67


>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 67  LQLCVAPIPGLPCFTGLYVTE 129
           L+LC    PG+P   G++  E
Sbjct: 222 LELCTRMFPGIPIMAGIFADE 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,377,842
Number of Sequences: 5004
Number of extensions: 46321
Number of successful extensions: 136
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)