Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_I03
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    29   0.44 
SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.77 
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.1  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    26   4.1  
SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces pom...    25   7.2  
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha...    25   9.5  
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    25   9.5  
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    25   9.5  

>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = -3

Query: 261 SVISFVMSRSLSDINNKFSEIDSRLTRQLFDKYVSLKYLNKVTADNIYYIDTYL 100
           S++ F+ +  + D++   + I  R   + F   +  KYL+K T  N+ YID +L
Sbjct: 102 SLMPFIWASHVLDLSVNMTPIFFRYIVRQFVNGIKSKYLSKETFLNLDYIDNHL 155


>SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -2

Query: 127 QYILYRYISSDFYYLLNVKCLLYYXINDHQISFKNSFVL 11
           Q IL +Y  + F+++ ++  L+    N  ++ FKNS VL
Sbjct: 126 QLILQKYQKNRFFFMSSINALIRISRNCIKLLFKNSLVL 164


>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 330

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -3

Query: 402 FLLKNETIPSVFSYDVVTFNYR 337
           FL+  +T+PS FS+ +VT N++
Sbjct: 271 FLVSFQTLPSFFSFPLVTDNWQ 292


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
 Frame = -3

Query: 450 SSVKSEKYLSNK*NYNFLLKNETIPSVFSYDVVT-FNYRQ*TDFTDNRYFFYGQGTSALL 274
           S+V   KYLSN  N    L      ++ +  ++T   +   T   D   FF+G    ALL
Sbjct: 465 STVPPPKYLSNSINGAKFLNPLAPWTLVNAPLITNLTHETITSLLDQEAFFHGNSPCALL 524

Query: 273 ALNLSVISF--VMSRSLSDINNKFSEIDSRLTRQL 175
           A     +++  V+ R    I +  +    RL R++
Sbjct: 525 ANFWGSVNYGHVLERQNVYIEDLSNPSYKRLAREI 559


>SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/33 (33%), Positives = 24/33 (72%)
 Frame = -3

Query: 228 SDINNKFSEIDSRLTRQLFDKYVSLKYLNKVTA 130
           +DI+++F E  ++L  ++  K V+ ++LN++TA
Sbjct: 59  ADIHSEFEEFLNKLQYKIPIKSVNKEHLNQITA 91


>SPAC139.05 |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 493

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 252 SFVMSRSLSDINNKFSEIDSRLTRQLFDK 166
           SFV  + +S  NNK  E+D+  T ++  K
Sbjct: 20  SFVQGKWISSPNNKTFEVDNPATGEIIGK 48


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 561 VPLCRSLRALACTSSLKW 614
           +P+  S+ A A TS LKW
Sbjct: 115 IPMATSINAFAFTSDLKW 132


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = +3

Query: 363 KKILMEWFHFSKENYNFICLIDIFHFSLNF 452
           K++   W +F   +YN++   DI+  +L +
Sbjct: 80  KEVPKSWSYFELSDYNYLSFNDIYDKALRY 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,338,738
Number of Sequences: 5004
Number of extensions: 43244
Number of successful extensions: 111
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)