Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_I03
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1062 - 30498158-30498271,30498358-30498518,30498606-304989...    29   4.3  
04_01_0156 - 1780395-1780686,1780773-1781248,1781263-1781678,178...    28   7.5  
10_08_0393 + 17517511-17517777,17518913-17518987,17519080-175191...    27   9.9  

>04_04_1062 -
           30498158-30498271,30498358-30498518,30498606-30498924,
           30499412-30499477,30499601-30499726,30499821-30499961,
           30500482-30500535,30501508-30501636,30501733-30501870,
           30501993-30502061,30502135-30502203,30502468-30502623,
           30503795-30503895,30503986-30504136,30504475-30504520,
           30504539-30504637,30504796-30504928,30505018-30505195,
           30505282-30505524,30505612-30505680,30505986-30506085,
           30506898-30507007
          Length = 923

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -3

Query: 543 GSVRHLSLSYLSERCIRVDSCYLFTCFRQV*SSVKSEK 430
           G++ H+S   L    +  + CYL  C  ++ +S++  K
Sbjct: 282 GTLEHISFESLEHELLETNKCYLLDCGAEIGTSLQVRK 319


>04_01_0156 -
           1780395-1780686,1780773-1781248,1781263-1781678,
           1781904-1782111
          Length = 463

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = +3

Query: 516 KRETDVEH-CRARRPIVPL---CRSLRALACTSSLKWNASERGNAAW 644
           K   +++H C +     P    CR  R+ AC +S  W++S R   AW
Sbjct: 413 KANAEIDHGCSSSTTSTPCGATCRRRRS-ACAASTHWSSSTRETTAW 458


>10_08_0393 +
           17517511-17517777,17518913-17518987,17519080-17519133,
           17519235-17519300,17519383-17519441,17520143-17520177,
           17520527-17520616,17520684-17520730,17520817-17520917,
           17521259-17521323,17521819-17522135,17522418-17522481,
           17522565-17522740,17523386-17523487,17523704-17523847,
           17523937-17524032,17524357-17524458,17524740-17524835
          Length = 651

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 611 FKA*SASESAQRSTKRHNRPPRSAVFDICLSLT 513
           FKA     S+  S+KR + P RSA+ D C+ +T
Sbjct: 73  FKAPPPPSSSSSSSKRED-PVRSAIIDSCIRVT 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,043,044
Number of Sequences: 37544
Number of extensions: 238000
Number of successful extensions: 588
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)